RNA id: TU1770485


Basic Information

Item Value
RNA id TU1770485
length 4052
lncRNA type antisense_over
GC content 0.45
exon number 3
gene id G1547253
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 39697634 ~ 39701800 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTGTTTTAATGAACCCTGATTACAATTTAATTACAAATAAGGGGTGAAAAATACAAGAGAAACAGAAGGTATGCTTCCTCAAGGCATGGAGTCTCATCTCTCAGTTTGAGTGTTAAATAACCGCTGAGAAGAGTGaacgaagagagagagggaggttagagggagagagatggtcaCCTTTCAAATAATACAATATCTTTTTCCTCACAGAGTCCTCCCAAAAgtgaaaaataatatatatacacaagaccaaaaaatatatttcaaaacgAAGGTAATGTGATAGGATTATGTGAGCCCCTCTTTTCCATGTGTCCACAATTACAAATACAACCAGCTTAGTTGAAGTTTTAACTACTATTTTAGTTCAGATAAGTGTAAGATGGAGGAGTTGTCATTGTTTGGAAAATACATactgaaaaataaaacacaactCATGAGAGATTCAAATAGCCATGGAAAAGAGGTAGGCCCAGGGTACAAAATAATCAAATAGTAAATcatgttaataataataataataataataataataataataataataataatgacagtaATAATATATTTTGAAAAATAAACAGCAATGATGATATTGAGGGAAAAGTATAGTAGGGAAAAAATGGTGATTTAATGTTTCTTTCTAAGCAACAATTAAGGCAGCTGTCAGTTACAATGCAAGGTGGGACAAAAGACTAGCTGGGTGGCTAAAGGCATCAGCATGCTTCTGTTTGACTGGTCCCGAACCGAATGACTGTGTTCGCAAAACTCCCTTAAAGACATtcgcttgaaaaacaagaaaaaaaagtgGCAATAGTAcggtttgtccattttgagatgccgtagccagtatacacttcctcaaagtAGTCAGAATAACTCAAGAAATATGTAATTAATTGAAGTTTTTGCAGAGAAGATCTTAGTCGCGCAATTTTAAACCTAACTAAGTGGGTGCAGTATTtctaaacaaaaaaaaatgtgcatgaaaatgaGTCGTCTCTCCTTGAATGACAActaagactttattgaagaatccatactgttgaccaatcaccgaagGGGCATAGACTTCAGCTACTGACGTCGGTTTCCTTCTAGAAAAAATATAATGTGCCCAAACAGCCGAAAAAACCTTACCGAAGTccaaaatgtaacaaaatgttagCATAATAAATCCACAAACTCTTCTGAACGGTTTCtgctgggaagcatgcggacgccttAAGGCAACACCAACAGCTGCTTAGACACCCACTCACGCCACACTAGCGCTATGAACAAACTCTGGGCAAGTCTTATTTTGGCCTGGATCTTGTTATGTTACCCAGCTGGAGGGGCATATACACAGTAGATGGCACCTGCAAAGCGTTTTCTCAGATTACGGGAAGTCCCTCTCCGAGGTTTTGTGATGTCATCTTCCTTTTACTCTAGGTTAGCCGCATTTACGCATTTCCACCCCTCTCAGCAGACCAGGTCTACCTCACATGTGTACACACAGGTGGTGGAGTGTTGCTGATGCATTCTCCTAGTATAGTTCATGGTCCAAGACAAAAGGCAGGTTCAGTAGACCTCTAGTCCCTGTGTTCCCAGGAGCATTTGGGATGTCGAGAAGGGGTGAGCCTGGTCGTAAAAGCTGAGGTTCAGGGTCCAAGATCTAACATTTCTCCATTATTTGTTCATTTACTGTCCCTTTACACTCACCATCCTTCAACCCCTAAACAGAATACTTGTTTTTATAGTACAAACAGAACCGTGTTCCGATTCCTCTTGCACAAGGACCCTTTTCAATGCAGTTCCACAGTCAAGAGGGGCAAGGAGATGCCCAACATATAGTTACCATTACAATTCCTGATTCATAATCAAATTATACGTTTTTTGGAAATATAACATTTGTATTTAATATATTCAAATAAAATGTGTAGTATTGGTTTAAGTTATTCAGCATCTGTTTCTTAAATGGTATAAAACAAATAAGGCAAAGTGGCAATCAGTGTATGCGGTCTGTTCCCACGCCACACCAACTCATTTCAGTACGGTATGCTCTTGAGGCTTctacagaagtgtgtgtgtgtgtgtgtgtttgtggggagGTACCATGTGAGTTAacaatgagatttttttttttttacacgagTGTGAACGCCAGGGAACaacattgtgtctgtgtgtgggagagtgtgagCACATTATTTGGCAGGGGTAATTCCTTTAAGTCACCTGTCAGTTTAAAAAAAAGGCACAATCTCAATTTGTCCGGTTTGTTCATTAAAACGGGCAAAGTTCAAATGTCACTAAAAAGGCTTTGTGAAGTTGCCTGATATCACCTCGGTACTCGCATTCATGGTATACTTTCTTGGGGCGGGAGGGGAAAATCTATTAATTTCAGTCTCGGTTCAAGAACATTGTATATACAGAGGTACTTCTAACCCTCCGTTCACTGCAAATGCCCCACCGCATCTCCCCAAATACGgtcctttttttttgttttttgaggCACCCTCTATGGGAGAAACAGGAGCGGCTTAAACGAGGGGAAAGGAGACCTTTAAGATAATATTTCAACAACATTTCAAGCGCGGACTAACTACCCATTTCCTCGATCCGCTCTTCTTAGAAGATTGTGCAAAAGTCTTGTAGGGTCCCCAAAAGCTGTCCATTAAGGCCTGGTTGGGTTGGGTACTGCATTGTTGCCATGGTAGGTGTCAATCAACACTTGAGTGACAGGAAGGCCATAAGAGACAAGGGGGGGGGGTCTCCAGTCAGTCCGTCCACGTCCTCTATAGATCTGCACGCCATTATGGTTTTTGTCCCTATGCTCAAGTCTGGGGAGAGACGATTATCAAAGAGCGTCTGGTGAAAAGGAGGGCTCACTCAGACAAATTCAGTCTTAAGTCTGTCCCTGTCGAAGAGGTCTGACATACGCGGACAAGGAGGTCTCTGTTTTGAATCCTGAGATCCCTTCCCAGTCATAAAAGGTGATGGAACAGTTGACAAGAGTTGGTAGGCGGTCCCCGTCAAGACAAGCACTTCTGTAATCTCTTTTCAAGTCTGTTGAAGGTAGAAGGCATTGTCGtgatgtcacccccccccccagtgtcaGCAATATTAAGGTTCTTCTGGGAGAGTGGGTCTGAAGGGACTCTTTCCCATCTGTTTTGATGCAACATAAAAGGCTAAGGAGCTAAGGGCGTTACTGGGAGGAGATGTTGAGGGGAGATGGAGGCACCTTAAGGCAGCGTACAGGTCTAAGGGATGGATCCTGGAACTAGGCCCGTTTAGAGGGGATATCTAATGGCCAGCCTTAGTTTCTCAGTCACAGCATGTTGAGCTGTGTGTTAATGTTCACTATTAAATCAGTTCAAAATGAGAGTAAAAAAAGCCTTCCGCACAGGCACTTGTGTATATGCGTAAGCTTGGTTATATGAGCGAGTGTGTATGTAGGTATGGGCATGagatcgtctctctctctctgtgtgtgtgtgtgtatccctgcCTCAACATGCTCCGTGGTTCTCCAGAGACAGCTGGGCTGTGGCTCTCTGCAGCTCGGAGCTGGCCCTGCGCTGGGCCGGAGGAGCCCCCAGACTCATGGACGGGCTTCTCCTTGGCCCCTCCCCATTCTCTGACTCCCTCCTTGCCggctcctccaccacctccttctCCGCCCGCACTTTCTTATCCTCGGCCTCCTCGCGCTCGCCATAGGCCTCCATCTTCTGGTCCTCGCTCCAGCGGCGTTTGAAGCGCAGCTTGAGGGGGATACAGAGGGTGCCGCCGGGGCTGATGGGAGGTCCCTGGCCTGGCTCGCTCTTGAGGCCCAGCAGGGAGGGAGTCAGAGGGCCCATGGGAGGGGCGGCGGGGGTCTTGAACACATCCTCATCCAGGTCGTCAGCGGCGATGGCACCCAGGTTGGTAATGGCGGTAGGGGCGGTTCCGTTGGTGGGATGAGGGGGGGTGAAGACGTCGCCCTCGTAGTCGTCGAGCAGCTCGTCCTCCTCGCTGATGTCGGTCACCTCCACTTCCTCATCGGACTCAATGTCAGAGACGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1770450 lncRNA upstream 97312 39600037 ~ 39600322 (+) True G1547223
TU1770449 lncRNA upstream 97797 39599561 ~ 39599837 (+) True G1547222
TU1770442 lncRNA upstream 107361 39590061 ~ 39590273 (+) True G1547215
TU1770067 lncRNA upstream 166497 39530528 ~ 39531137 (+) False G1546868
TU1770071 lncRNA upstream 166497 39530528 ~ 39531137 (+) True G1546868
TU1770559 lncRNA downstream 47788 39749588 ~ 39750020 (+) True G1547327
TU1770561 lncRNA downstream 49910 39751710 ~ 39752942 (+) True G1547329
TU1770562 lncRNA downstream 54400 39756200 ~ 39756869 (+) True G1547330
TU1770565 lncRNA downstream 58252 39760052 ~ 39760449 (+) True G1547333
TU1770569 lncRNA downstream 62270 39764070 ~ 39764299 (+) True G1547337
XM_036952764.1 mRNA upstream 75449 39619719 ~ 39622185 (+) False LOC118941156
XM_036952763.1 mRNA upstream 75449 39619727 ~ 39622185 (+) True LOC118941156
XM_036951045.1 mRNA upstream 110772 39585870 ~ 39586862 (+) True LOC118940977
XM_021571960.2 mRNA upstream 340510 39326837 ~ 39357124 (+) False LOC110496201
XM_021571988.2 mRNA downstream 363460 40065260 ~ 40077268 (+) False LOC110496217
XM_036952776.1 mRNA downstream 394028 40095828 ~ 40101459 (+) False kifc1
XM_036952777.1 mRNA downstream 394028 40095828 ~ 40101459 (+) False kifc1
XM_036952778.1 mRNA downstream 394546 40096346 ~ 40101459 (+) True kifc1
XM_021571996.2 mRNA downstream 401931 40103731 ~ 40110006 (+) False LOC110496221
TU1770013 other upstream 228269 39467454 ~ 39469365 (+) True G1546817
TU1769903 other upstream 325153 39358411 ~ 39372481 (+) False G1546713
TU1769824 other upstream 551382 39133119 ~ 39146252 (+) True G1546641
TU1769768 other upstream 577615 39116488 ~ 39120019 (+) True G1546605
TU1768490 other upstream 1006365 38690438 ~ 38691269 (+) False LOC110496176
TU1770566 other downstream 59413 39761213 ~ 39761503 (+) True G1547334
TU1770924 other downstream 333717 40035517 ~ 40040594 (+) True G1547652
TU1771006 other downstream 404195 40105995 ~ 40106776 (+) False LOC110496221
TU1771007 other downstream 404478 40106278 ~ 40106846 (+) True LOC110496221
TU1771032 other downstream 500109 40201909 ~ 40202458 (+) False G1547743

Expression Profile