RNA id: TU1770599


Basic Information

Item Value
RNA id TU1770599
length 361
lncRNA type intronic
GC content 0.57
exon number 1
gene id G1547367
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 39814315 ~ 39814675 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCACTGGCGTGATGATGCGGAACGGAGGGATGATGGGGTtcttctctccctgcctctcctctgcgTCATAGAGGCGAGACAGGGCGTCCTTCTTCACATTCTTCGAGACTGGCCTATAGGAAATCGTGAATTGGAACCTGGCGAAGAATAGTGCCCAACTGGCCTGTCTCGGGTTTAGCCTCTTCGCTGCCCtgatgtactccaggttgcggtggtccGTCCACACCAGGAAGGGTGCTTGGAcccctccagccagtgcctctACGCCTTCAGAGCCTTCTTGACTGCCAAGAGTTCCCGGTCCCCTACGTAGTAGTTCCTCTGGGCGGGGCTCAGCTGTTACCAAGCCATGACATAAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1770569 lncRNA upstream 50016 39764070 ~ 39764299 (+) True G1547337
TU1770565 lncRNA upstream 53866 39760052 ~ 39760449 (+) True G1547333
TU1770562 lncRNA upstream 57446 39756200 ~ 39756869 (+) True G1547330
TU1770561 lncRNA upstream 61373 39751710 ~ 39752942 (+) True G1547329
TU1770559 lncRNA upstream 64295 39749588 ~ 39750020 (+) True G1547327
TU1770613 lncRNA downstream 19353 39834028 ~ 39834271 (+) True G1547381
TU1770614 lncRNA downstream 19794 39834469 ~ 39835365 (+) True G1547382
TU1770616 lncRNA downstream 22774 39837449 ~ 39837773 (+) True G1547384
TU1770635 lncRNA downstream 54182 39868857 ~ 39871465 (+) True G1547400
TU1770850 lncRNA downstream 88547 39903222 ~ 39906256 (+) True G1547587
XM_036952764.1 mRNA upstream 192130 39619719 ~ 39622185 (+) False LOC118941156
XM_036952763.1 mRNA upstream 192130 39619727 ~ 39622185 (+) True LOC118941156
XM_036951045.1 mRNA upstream 227453 39585870 ~ 39586862 (+) True LOC118940977
XM_021571962.2 mRNA upstream 457191 39337594 ~ 39357124 (+) False LOC110496201
XM_021571988.2 mRNA downstream 250585 40065260 ~ 40077268 (+) False LOC110496217
XM_036952776.1 mRNA downstream 281153 40095828 ~ 40101459 (+) False kifc1
XM_036952777.1 mRNA downstream 281153 40095828 ~ 40101459 (+) False kifc1
XM_036952778.1 mRNA downstream 281671 40096346 ~ 40101459 (+) True kifc1
XM_021571996.2 mRNA downstream 289056 40103731 ~ 40110006 (+) False LOC110496221
TU1770566 other upstream 52812 39761213 ~ 39761503 (+) True G1547334
TU1770013 other upstream 344950 39467454 ~ 39469365 (+) True G1546817
TU1769903 other upstream 441834 39358411 ~ 39372481 (+) False G1546713
TU1769824 other upstream 668063 39133119 ~ 39146252 (+) True G1546641
TU1769768 other upstream 694296 39116488 ~ 39120019 (+) True G1546605
TU1770924 other downstream 220842 40035517 ~ 40040594 (+) True G1547652
TU1771006 other downstream 291320 40105995 ~ 40106776 (+) False LOC110496221
TU1771007 other downstream 291603 40106278 ~ 40106846 (+) True LOC110496221
TU1771032 other downstream 387234 40201909 ~ 40202458 (+) False G1547743
TU1771080 other downstream 511800 40326475 ~ 40327181 (+) True G1547788

Expression Profile