RNA id: TU1771691


Basic Information

Item Value
RNA id TU1771691
length 947
lncRNA type antisense_over
GC content 0.43
exon number 3
gene id G1548317
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 40154838 ~ 40169209 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATGACTGACAAATTAAACCTACACAAGTATCTCAAAGAGAAATCACATTGAGATCTGACATTCACCAACCTGCCACTCAGGTGATTGGAGAGTGACCTTACCAATGCCATACAAGCATAAAGATGGCATGCTTATAGTTCGATGCCATTTACAGTAGTGGTATGGTCATTGTCCTCTGTACCTCACACACTTAAAACAGTACACAGTAGTAATAAAATGAATGCTGTGCTGGTGTCCAGGAGAAAGAATTGggaccatacatacagtaaaCATAAACAGAGAAACAAAGGAGACCATGCTAGATGCTTTGAAATACTGATATCAGCAAATGATGCTGTGTGGTAAGTGTGTGGAGAAAACAGAAACAGGACGGGAGGAGCGGATCTGTACATCCCTGATATTCTAGATCTGTAACTTTAGCGATCACTTCTCTAATCCTGTGTAATTCTTGTCTCCTAGAATAAGGAAGTGCCCGTTTTGATAGTTTATAAGCACAAACACAAGCGCAACTGATCAGATGAAGTAAAGATGAAGGATTTACCTCCACTTTGGTTAAAACGCTGCTTTACAATATCGATGCTGGCTTTGTAAGTCTGCTGGGTACCCTTGAGAATCCCTGTCTGACTCTCCCAGTACTGTGGCAGTGTTTCTGCTGCCTTGTTCATCCAGTCCTGTCTGGGCACCATTCTTTGGCTGTTGCTGTCATAGTGAACCATCTGaacaccatccaccatccccacaACCACGAACTCTGGGAAGTTGGGAACTTCAGAAGATGCGGTGTAGAAATACTTCAGGGAGTGAGTCAGCAGATGCTGTATGAAGAAGGCCTATTCCCAGCACCAGCAAGATAATACCCTTCATGTTGACGAAGTATGTTATCTCCAATAGGTATTATATTCAGATTCTCTCTAACTGCGTTACCCACTTCAGTAGCCTATTCCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1771634 lncRNA downstream 101237 40053375 ~ 40053601 (-) True G1548270
TU1771621 lncRNA downstream 124335 40029984 ~ 40030503 (-) True LOC110496213
TU1771616 lncRNA downstream 129396 40025236 ~ 40025442 (-) True G1548260
TU1771613 lncRNA downstream 132840 40021788 ~ 40021998 (-) True G1548257
TU1770872 lncRNA downstream 229845 39924639 ~ 39924993 (-) True G1547609
TU1771698 lncRNA upstream 1650 40170859 ~ 40182138 (-) True G1548323
TU1771700 lncRNA upstream 2280 40171489 ~ 40172837 (-) True G1548324
TU1771709 lncRNA upstream 37430 40206639 ~ 40207042 (-) True G1548331
TU1771755 lncRNA upstream 65911 40235120 ~ 40239085 (-) True G1548376
TU1771756 lncRNA upstream 70343 40239552 ~ 40239752 (-) True G1548377
NM_001124553.1 mRNA downstream 24643 40125565 ~ 40130195 (-) True tapbp.1
XM_036952779.1 mRNA downstream 31967 40111013 ~ 40122871 (-) False LOC110496222
XR_005037471.1 mRNA downstream 31967 40111013 ~ 40122871 (-) True LOC110496222
XM_036952780.1 mRNA downstream 32289 40111013 ~ 40122549 (-) False LOC110496222
XM_021571989.2 mRNA downstream 61066 40080215 ~ 40093772 (-) False LOC110496218
trnaa-ugc-138 mRNA upstream 17933 40187142 ~ 40187215 (-) True trnaa-ugc-138
XM_036952783.1 mRNA upstream 39255 40208464 ~ 40209202 (-) True LOC118941158
XM_036952782.1 mRNA upstream 41075 40210284 ~ 40213780 (-) True LOC110496227
XM_036952794.1 mRNA upstream 149836 40319045 ~ 40369171 (-) False LOC110496231
XM_036952793.1 mRNA upstream 149836 40319045 ~ 40369172 (-) False LOC110496231
TU1770684 other downstream 466157 39684787 ~ 39688681 (-) True LOC110496816
TU1770675 other downstream 506824 39642855 ~ 39648014 (-) False LOC110496816
TU1770674 other downstream 508305 39642855 ~ 39646533 (-) False LOC110496816
TU1770682 other downstream 523740 39625775 ~ 39631098 (-) True LOC110496208
TU1769526 other downstream 1367037 38776284 ~ 38787801 (-) True G1546396
TU1771745 other upstream 216761 40385970 ~ 40391883 (-) True G1548367
TU1771911 other upstream 470966 40640175 ~ 40685641 (-) True G1548517
TU1772024 other upstream 736478 40905687 ~ 40908625 (-) True LOC118941164
TU1773336 other upstream 1494227 41663436 ~ 41671514 (-) False LOC110496277
TU1773335 other upstream 1499051 41668260 ~ 41671514 (-) True LOC110496277

Expression Profile