RNA id: TU1771755


Basic Information

Item Value
RNA id TU1771755
length 3966
lncRNA type antisense_over
GC content 0.42
exon number 1
gene id G1548376
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 40235120 ~ 40239085 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTAggataggttttaatagtcacagtgggtacaacatctcctatagcCTTCCTGATAACCTCAGTCACCGTATTAGtatatttgtttatgtttttcTCTGAGGCCACCCGGAACATAtaccagtccgcgtgatcaaaacaatcttgaagcgtggattctgattggtcagaccagcgttgaattgtccttagcacgggtacttcctgtttgagtttctgcttgTAGGAAGGGGGGAGCAAAATCGAGTGTGATCAGATTTGCAGAAGGGAGCACGGGAGAGGGTCTTGTAGGCATCgcggaagttggagtagcagtggtcgagtatTTTAGCAGCGCGTGTACtatagtcaatgtgttgataaaaATTTGGTAACGTTTTCCTCtattttgctttgttaaaatcgcCAGCTACAAGAAATTCTGCCTCagcatatgtggtttccagtttgcataaagtccagtgaaatTCTTTGAGGGCCATCGTGGCATCGGGTATATACACGGCtatgactataaccgaagagaattctcttggaaggtaattcggtcggcatttgattatgaggtattctaggtcTGGTGAACTTTTGTtcacttgagttcctgtatgttatcacaatcacaccatgagtagatAATCATGGAACACACCCCTGtccttcttcccggagagatatttatttCTGTCTGctcgatgaactgagaacccaactggctgaaCAGACTCAGACAGTGTATCCGAGTaacaaacatttctgggatcttttatttcagcccctgaaacatgggaccaacactttacatgctgtgtttatatttttcttcagtgtatAATGACCATTTGCAGTGCTTGAATTACAGCAACTGGTAACCAGTTATGGATGCTTTATCTAAATAGTGAGAAaagagtgtagtagtagtgggggCCACCTCTGGCTTCTGGAGGTCTCAAAAAGTTCCATCATGTTTGATGACACACAGGTCCACGTTACTTCCAGAGCCCAGGTCGTTCATGATGCCAGCTGGTTCATGATGCCAGATGTTATGGCTTCCCGCACAAACTGCTTGGCCTCCTCCTCCTAACAAAATAAACACAGGCACAAAAGGAGTTAGTTGGCCTACATTTGCACTATTAATGTTATTCTCCCGTGAATAGATATAGGTAAAGTTACATTCATATTAGGTTTATAACGATCTTCGAAAACAACCAATACTGCAAGGTCACCAGATCCTGAACTGGAAAAAAATCATACTAACCATACGAACATATCCAGACATGTTCTTTTATCTTTCATCTTCCAAGATGTCCTCACTCTTTCCTCTACAATTGTCTTCATTCAAACTCAGACACAGGGAGCGCAGAGGAGGAGGGAATTATGTTTACATACTACATTATGAAAAACACAATACCATCTTTGTGTATCTAACAACTCCTCAATGTCACAGGGAAAGCATACAAATTGATAAAAAAATAGTGAAGATTAATACAAACCCATGGTGGTGAATGGGGCCTTGTTGACTGAGCCAAAGGGGCCCACTGTGAAGATATGTGGGCTAGTGCAGTCTACCCCACCAAAAGCAGCATGGCACTGTTCTGACCGCTGTGCCGGCACTCCAAAATAGACTGACATGGTTAAAAAGCCTAATAGATAAATTGTTTTCACTGTCCTGTTATTTTAGTGAATGGTAGACAAGGAACTGTGTATCACAGTATATTTTGAACCCAAATACAACATTTTCAACAGCAGCCAGAGGCGTACACTTCTGTAAATGGAAGCTGACTCAAATCAATTAACACTGCATAACAATAACACCCACTGGTGCGTTCAGAGGTCCATTTTGTCCCTTCGCTAATAAGATCAACCTCTGTCAGACAAAACATTATTATGTAGACTAGAAGGTCACCTGAAAGTAAAGTCCCGTAACATGCAGCATCTGTTGATTGCAGAGCCGGATTTGAGTGCGGCATACTGTATCAATTGTCTATACCAGCTGCAGTGCCAGTTTCACAGGTCAGTGTGCTGCTAACAGTTACCCTCCCCGCTGTCTAACTGCTGGCTTGAACCAAGGTTCTGCGTCGCAGCACACGTGGCCACCCTGCTTGACAACGTTACCAACTGATTGAGCCACTTAAGATGTCCTTCTTGAGTGGCCCCAGCCGAGACATTTGAAGCGTGCTGTAGAGTGAGCTTTTTTCCCCCTCTGTTACACGAGCTCCACAGCATCTGTGGGAGAGGGAACCTCTCTCTATGTTTCAGGGACACCAACGGTCACAAACCAACACAACAGAGCAAGACAGGTTCTAAGCTTGTCTTAATTAGGTTCAATCATATACACTGCTGATTTGAAGGTAGGACAGTGATGTATTTCAGTGTGGACTGATGGTAGTCGCAGTCTTCAGCCTCTAGTTTTTGCCAACTGAATTGTCTTGAAACGTTTGTGCAAGGGGACTTACGCATGTTGCATGTGTATGCATGGCATGCACCTCCTGTATGTGAGAGAGTATTTCCCTctttgttccctccctccctctctccctgctccctccctcattGTTGGTACTGATATAGTCAGTTGGTACGTGGATTGTTGTCGATAAGTCACCAAACTTATGGGACAGGCGAGGGGACAACACTGTATCTCTAACTGACAATGCAAACttgagaaaatatatattttagatatatattacataaagaatatacttaacaaaaatataaacgcaacatgtaaagtgttggtcccatgtttcatgagctgaaataaaagatcccagaaatgttccatatgcacaaaaagcttatttctctcaagttTTGTACacattagtttacatccctgttagtgagcatttctcatttgccaagataatacatccacctgacaggtgtggcatatcaagaagctgattaaacagcatgattctTACACATGAGCAagttgtgctggggacaataaaaggccactttaaaaagtgcagttttgtcacacaacacaatgccacagatgtctcaagttttgagggagcatgcaaaactgagtagtatttctgtctgtaataaagcccttctgATTGGCAGGGCCTGCCTCCCAAATGGGTGGGCATGGCTGCACCtctgctcagtcatgtgaaatccatagtttagggcctaatttatttatttctattgactgatttccttataagaacagtaactcagtaaaatcgttgaaattgatGAATGTGGCTACATCACAGTTATCTCACGAATGTCATGTATCTCATGATTGTTACACTTCCAATATCAATATACTGTATAAGTATTGTTGGATATTGAAATGGACTTTGGCTGCTGCATGTACAACAAATTCAGTAAATGGTACAGTCTAGTCTAAGAGTCTAGTCTAATCTGCCTAGTTTGGTTTGGTGTGTGCCACCTCTGTGTCTGCAAACTGGTTACTCTAGTTTCACCTTTCATAACAGTTTACCTCTGCTATTTGATTACCACCAGTATGTTTGATATCCTCTTCTCTGTCAGGTCAACATGGTGACTCACCATCAACATGTGTTACCTAAGGTGATGCTGGCGATGAGGCTAGGAAGTTGTGCTTCATTTGCTAAGACTATTCTCAAATAACTACACCAGAGCAAGTCTGTGTACAACCAGATAAGGTGTCTTTGGTTCAACCAGATAAGTAGTCACAAGACCCGGGGCTTGGCTTGGTTTTTCTTGGTGATGTGTACTAATGTGAAAGAGAAAGCAGAAAGGCAGAAGGGACTTACAAACGTGGTGTGATTGCAAGCCAACTGTTTCGGTATGGAGTGGTTACACAATTGCCACTTCACCCATGTCAGATTTAGATCAAGATGTCGGCCATTTTGGGATGCCAGGAGGTCTTGAGATGAAATGGCTGCTGGTATTTCCCCAttgtgctctccctccctccttggcAGTGGGTAGGTGGATTGTTGTTAATAAGTCACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1771709 lncRNA downstream 28078 40206639 ~ 40207042 (-) True G1548331
TU1771698 lncRNA downstream 52982 40170859 ~ 40182138 (-) True G1548323
TU1771700 lncRNA downstream 62283 40171489 ~ 40172837 (-) True G1548324
TU1771691 lncRNA downstream 65911 40154838 ~ 40169209 (-) True G1548317
TU1771634 lncRNA downstream 181519 40053375 ~ 40053601 (-) True G1548270
TU1771756 lncRNA upstream 467 40239552 ~ 40239752 (-) True G1548377
TU1771759 lncRNA upstream 6267 40245352 ~ 40245648 (-) True G1548380
TU1771760 lncRNA upstream 8918 40248003 ~ 40248270 (-) True G1548381
TU1771763 lncRNA upstream 21059 40260144 ~ 40260373 (-) True G1548384
TU1771764 lncRNA upstream 21365 40260450 ~ 40260882 (-) True G1548385
XM_036952782.1 mRNA downstream 21340 40210284 ~ 40213780 (-) True LOC110496227
XM_036952783.1 mRNA downstream 25918 40208464 ~ 40209202 (-) True LOC118941158
trnaa-ugc-138 mRNA downstream 47905 40187142 ~ 40187215 (-) True trnaa-ugc-138
NM_001124553.1 mRNA downstream 104925 40125565 ~ 40130195 (-) True tapbp.1
XM_036952779.1 mRNA downstream 112249 40111013 ~ 40122871 (-) False LOC110496222
XM_036952794.1 mRNA upstream 79960 40319045 ~ 40369171 (-) False LOC110496231
XM_036952793.1 mRNA upstream 79960 40319045 ~ 40369172 (-) False LOC110496231
XM_036952792.1 mRNA upstream 79960 40319045 ~ 40369173 (-) False LOC110496231
XM_036952789.1 mRNA upstream 79960 40319045 ~ 40369178 (-) False LOC110496231
XM_036952790.1 mRNA upstream 79960 40319045 ~ 40369178 (-) False LOC110496231
TU1770684 other downstream 546439 39684787 ~ 39688681 (-) True LOC110496816
TU1770675 other downstream 587106 39642855 ~ 39648014 (-) False LOC110496816
TU1770674 other downstream 588587 39642855 ~ 39646533 (-) False LOC110496816
TU1770682 other downstream 604022 39625775 ~ 39631098 (-) True LOC110496208
TU1769526 other downstream 1447319 38776284 ~ 38787801 (-) True G1546396
TU1771745 other upstream 146885 40385970 ~ 40391883 (-) True G1548367
TU1771911 other upstream 401090 40640175 ~ 40685641 (-) True G1548517
TU1772024 other upstream 666602 40905687 ~ 40908625 (-) True LOC118941164
TU1773336 other upstream 1424351 41663436 ~ 41671514 (-) False LOC110496277
TU1773335 other upstream 1429175 41668260 ~ 41671514 (-) True LOC110496277

Expression Profile