RNA id: TU1771763


Basic Information

Item Value
RNA id TU1771763
length 230
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G1548384
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 40260144 ~ 40260373 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTAAAGGAGGTTGGTGTTATGCAAACGTCGaccaacccaaaggttgcgtattcaaatctcatcacagtcaacttttgcaactacttactacttttgagctactttgcaactacttgcacgtcccctaaccctttaacataactcctaaccctaacctcaaatcCTAACAGAACATAGcatatcatactaaagcagttgaacgtaatatatcatactaaacGGGTCAAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1771760 lncRNA downstream 11874 40248003 ~ 40248270 (-) True G1548381
TU1771759 lncRNA downstream 14496 40245352 ~ 40245648 (-) True G1548380
TU1771756 lncRNA downstream 20392 40239552 ~ 40239752 (-) True G1548377
TU1771755 lncRNA downstream 21059 40235120 ~ 40239085 (-) True G1548376
TU1771709 lncRNA downstream 53102 40206639 ~ 40207042 (-) True G1548331
TU1771764 lncRNA upstream 77 40260450 ~ 40260882 (-) True G1548385
TU1771765 lncRNA upstream 877 40261250 ~ 40261636 (-) True G1548386
TU1771766 lncRNA upstream 1404 40261777 ~ 40262089 (-) True G1548387
TU1771767 lncRNA upstream 1763 40262136 ~ 40262463 (-) True G1548388
TU1771769 lncRNA upstream 3714 40264087 ~ 40264391 (-) True G1548390
XM_036952782.1 mRNA downstream 46364 40210284 ~ 40213780 (-) True LOC110496227
XM_036952783.1 mRNA downstream 50942 40208464 ~ 40209202 (-) True LOC118941158
trnaa-ugc-138 mRNA downstream 72929 40187142 ~ 40187215 (-) True trnaa-ugc-138
NM_001124553.1 mRNA downstream 129949 40125565 ~ 40130195 (-) True tapbp.1
XR_005037471.1 mRNA downstream 137273 40111013 ~ 40122871 (-) True LOC110496222
XM_036952794.1 mRNA upstream 58672 40319045 ~ 40369171 (-) False LOC110496231
XM_036952793.1 mRNA upstream 58672 40319045 ~ 40369172 (-) False LOC110496231
XM_036952792.1 mRNA upstream 58672 40319045 ~ 40369173 (-) False LOC110496231
XM_036952789.1 mRNA upstream 58672 40319045 ~ 40369178 (-) False LOC110496231
XM_036952790.1 mRNA upstream 58672 40319045 ~ 40369178 (-) False LOC110496231
TU1770684 other downstream 571463 39684787 ~ 39688681 (-) True LOC110496816
TU1770675 other downstream 612130 39642855 ~ 39648014 (-) False LOC110496816
TU1770674 other downstream 613611 39642855 ~ 39646533 (-) False LOC110496816
TU1770682 other downstream 629046 39625775 ~ 39631098 (-) True LOC110496208
TU1769526 other downstream 1472343 38776284 ~ 38787801 (-) True G1546396
TU1771745 other upstream 125597 40385970 ~ 40391883 (-) True G1548367
TU1771911 other upstream 379802 40640175 ~ 40685641 (-) True G1548517
TU1772024 other upstream 645314 40905687 ~ 40908625 (-) True LOC118941164
TU1773336 other upstream 1403063 41663436 ~ 41671514 (-) False LOC110496277
TU1773335 other upstream 1407887 41668260 ~ 41671514 (-) True LOC110496277

Expression Profile