RNA id: TU1772020


Basic Information

Item Value
RNA id TU1772020
length 1501
lncRNA type antisense_over
GC content 0.44
exon number 1
gene id G1548612
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 40736764 ~ 40740990 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAAAGAGTCTATATATATTAATTTGGAACCAACAGCATGAATGATCCAGTTGCTTTCCTTTCGAGTTTTGTCCACATCCTGCATTTTTAGTCCCATCTTCTGACGTGAGATGTCCGTGTCCTCACTGTCTTTCGCCATTCTGTTTTGGTTCTGTTTTTGTCATTTGTGGACTTTATCCACATGTTTCAGCAGGTAAGCATTCCCAGTGAATCTTCTACCGCACACAGAACAGCCATGCTGTTTTTTACCTGTGTGAGTCAGTATATGCCTGTTCAGATGTGTTTTTCGACTGAATTTCTTTCCGCAGCTACCACAGCTAAatggtctctctcctgtgtgagtacGTACATGTTGGGTTAGGTTCCCCTTCTGATAGAAGCTTTTCCCGCAGTATCCACAGCTAAATGCTTTCTCTCCTTTATGAGTCTGTATATGCACATTCAGCAGCCCCTCGCTATAGAAGCatttcccacagtcaccacagctaaatggCCTCTCCCGTGTATGAATCCTCATGTGCTGGGATAGATGTGCTCTGTTTTTAAAGGTCTTGCCACAAACAAGGCAGGGGTTCCCACCGTGACAGAGTGGGACATGGGCCTTCAGTTTACTGGTGGAGTTGTAGGGGCATTCAACGGGTCTTTCCCTGGCGAGAGTCACATGCCTCTGAAGGTCAGCTTTTAGAGCAAATACTTTGCCGCAGTCACAGCAGCAGTGAGATTTTTTAGACATGGTACTGAGTTTAGAACAGTATGCCCCCAATGTTGGTTCGGGAGCCAATGGTGGACTGTTTACTTGGTCACTAATTACAGCTGAGCAGTGGCTGATGGCTTCCTGATCCCATTCACTTTTCACACAGGGAGAACTAAATATAAACTCTATGGTATTACCCTCTGGCCCTTGAAACTGCTCTTCCTCCTGGCTGGTCCTCAGTTCCTCTTTAATCAGTATGTGCCCTGGTTCCTCTTGTCCCAGACTAGGGCACCACTCCTGCTCACAGTGTTTTTGCTCAGGGGGAAACTCCTcttcagagacagggagagagagctgctGGGAGTCTGGATGGAAGAAATGATAGGCGCAGACATGACTGAGTACACATTATTTTTGCAAAATCAACTAAAAAGATAATGAAATGATAATCGCTGATAGCCTAAACAGTATATTAAGTGAGTAAATGGGATCTACACACAAACCTATTGTACATAGTTTTATACCCGGTGTAATCCCAAGTTGTCTCCGTAGACGATCATTCTCCTCTTTAGATCGTGAGATCTCATCCTGGTACTCAGTTACGACTTTCTCAACTGCCCCCAAAATCTCCACCGTCGCCGCAGTCAAACACTCAGAAAGAAACGAATTCAAAGACTGTAATTTAGACATTGTTAGTAGACTTGTGGTATTATTATTGTCAAAAGAGCCTGTTCCTCTCAGGTTTTATTCACCTATGTAGTCTACAATTCGTCTACGAGGAAGGAATGTTAAAAAAGAAACTCGCTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1771903 lncRNA downstream 39289 40696250 ~ 40697475 (-) True G1548513
TU1771898 lncRNA downstream 42032 40692439 ~ 40694732 (-) True G1548512
TU1771896 lncRNA downstream 43622 40646962 ~ 40693142 (-) False G1548512
TU1772016 lncRNA upstream 1611 40739875 ~ 40740990 (-) True G1548612
TU1772022 lncRNA upstream 4469 40742733 ~ 40743516 (-) True G1548613
TU1772038 lncRNA upstream 22081 40760345 ~ 40760570 (-) True G1548627
TU1772042 lncRNA upstream 45714 40783978 ~ 40786646 (-) True G1548631
TU1772058 lncRNA upstream 93101 40831365 ~ 40831747 (-) True G1548647
XR_005037478.1 mRNA downstream 58687 40675469 ~ 40678077 (-) True LOC118941161
XR_005037479.1 mRNA downstream 58693 40675469 ~ 40678071 (-) False LOC118941161
XR_002469532.2 mRNA downstream 183145 40545209 ~ 40553619 (-) True LOC110496249
XR_005037481.1 mRNA downstream 233286 40501665 ~ 40503478 (-) True LOC118941163
XR_005037480.1 mRNA downstream 235354 40500738 ~ 40501410 (-) True LOC118941162
XM_021572036.2 mRNA upstream 48563 40786827 ~ 40807771 (-) False LOC110496253
XM_021572037.2 mRNA upstream 48563 40786827 ~ 40807771 (-) True LOC110496253
XM_036952831.1 mRNA upstream 76563 40814827 ~ 40901989 (-) False LOC110496254
XM_021572040.2 mRNA upstream 76563 40814827 ~ 40901990 (-) False LOC110496254
XM_021572039.2 mRNA upstream 76563 40814827 ~ 40901991 (-) False LOC110496254
TU1771911 other downstream 51123 40640175 ~ 40685641 (-) True G1548517
TU1771745 other downstream 344881 40385970 ~ 40391883 (-) True G1548367
TU1770684 other downstream 1048083 39684787 ~ 39688681 (-) True LOC110496816
TU1770675 other downstream 1088750 39642855 ~ 39648014 (-) False LOC110496816
TU1770674 other downstream 1090231 39642855 ~ 39646533 (-) False LOC110496816
TU1772024 other upstream 167423 40905687 ~ 40908625 (-) True LOC118941164
TU1773336 other upstream 925172 41663436 ~ 41671514 (-) False LOC110496277
TU1773335 other upstream 929996 41668260 ~ 41671514 (-) True LOC110496277
TU1773748 other upstream 1577022 42315286 ~ 42316079 (-) True G1550177
TU1773779 other upstream 1620884 42359148 ~ 42359628 (-) True G1550202

Expression Profile