RNA id: TU1772283


Basic Information

Item Value
RNA id TU1772283
length 1387
lncRNA type antisense_over
GC content 0.41
exon number 1
gene id G1548848
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 41203971 ~ 41205357 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGGTTTATTAAATCATTGCAAAATACAAGAGCGATCAAACAgtattttctctatttttgttgGCATAAGTATGTAAACATGGCAGCATAGATACATTTTATGTGCCTGTCGTTTACATGAGAGTGGGGATGAGCATTAGATAAGTCCATGTTTGTTTAAATGAATAGTTCTTATTACCATGCCAGACTTTCTATCATGTCGTTAATGGTGACAAAGAGAAAAAAGAATCAGACGAGGTGTGCTTTGACATCATGGTGAGAGGACACCACTATCATGGTGGACCAATAGCcaagaagggagagaagagttGGAAAGCAATGACAGGGAGTGAGGTTCAGATACAGATGgcaaaacagacaaacacagagaacCATACCACAGGAATCAAACTGGAGAACAGAACACCAAACAAGATTGAAGGAAACTTGATGTACATGTTTGGGATAGAGAAAGTGTTCAGGCGAAAGACAgaagaaagagatggagacatcCCATGAAGGTTGCAGGAGAAAATTGGCAAGAGCCAAATACATCCCAGAGATGCAAGATGGCTTACCTTCCACATTAACATGTTCCAACATATGTCTGGGATTTCCGAGACTATAGAAGAGACCAATGGAGTGGAGTTAGACAAACACCAAATAGAAGAGGACAGAGCGTGTGGATCAAGGGTCTCTGGAGCCGTAGAGCCTAAAACAGCTGAAGGGCACATGTGACCAGGAGTCTCCAGCAAGCCCAGAACAGTGGCGCAACAAGCAAGAACAGAGGACGCCAGGAGGATAAGCAGTAGGGAGAACGAGTCGGGGCAGATAGAAAATGTCTCCGTCCACCAGAGGGCAGAGGAGGTGAGGAACAAGTGCATGGCTTCTATTAGCGCTGAAGAAAAGGATGGAGTGAGACCATGATCAAACTGCAGAAATACTAGTCACCCAGAACAGAACATTTCCATTGCTTTCAAACAAAACCCATCAAAGCATTTATGTTACACCTTGGTGCCCGTTTTCTTATCAGTCTGGTTGTGCTGAAATATGCAGGTTTTTTTTTACAGCCAAGTActtgtgacaaaaaaaaaactgcatttgGCAGTAATAGTTTAAATAATAAGGGTCATTATGAACAGTTTAAGTACTGCATTTACTGTAATACGAAAAGGCAAACGGAAAAACGAACACCAATATTCATAGACAGAAAACACAAAGAAGATCCTTTCACACAATAAATGACTAGTTTGATTAGGCCACCATAAGCAAATGGTTGTCTATCAGTGAACAAACAGTAACTATCCTACAAAAAGTCAATCATAACGGCAACGGAATAGTAGGTGCTGTAATTGCATTTCAACAAACAGTGAGTGCGCAGTTTTACTCTGTTGTTCAGCTTACTTCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1772277 lncRNA downstream 21684 41182066 ~ 41182287 (-) True G1548845
TU1772253 lncRNA downstream 71979 41131459 ~ 41131992 (-) True G1548824
TU1772154 lncRNA downstream 130107 41001115 ~ 41073864 (-) True G1548739
TU1772091 lncRNA downstream 246100 40889592 ~ 40957871 (-) True G1548678
TU1772025 lncRNA downstream 295346 40902519 ~ 40908625 (-) False LOC118941164
TU1772489 lncRNA upstream 144726 41350083 ~ 41350320 (-) True G1549043
TU1772494 lncRNA upstream 151115 41356472 ~ 41356756 (-) True G1549048
TU1772501 lncRNA upstream 158767 41364124 ~ 41364360 (-) True G1549055
TU1772523 lncRNA upstream 175137 41380494 ~ 41380749 (-) True G1549077
TU1772542 lncRNA upstream 188453 41393810 ~ 41394099 (-) True G1549096
XM_021572058.2 mRNA downstream 34839 41165539 ~ 41169132 (-) True ndufb9
XM_036952832.1 mRNA downstream 295227 40903756 ~ 40908744 (-) False LOC118941164
XM_021572042.2 mRNA downstream 301979 40818257 ~ 40901992 (-) True LOC110496254
XM_021572039.2 mRNA downstream 301980 40814827 ~ 40901991 (-) False LOC110496254
XM_021572040.2 mRNA downstream 301981 40814827 ~ 40901990 (-) False LOC110496254
XM_036952838.1 mRNA upstream 20328 41225685 ~ 41321792 (-) False LOC110496267
XM_036952839.1 mRNA upstream 20328 41225685 ~ 41321792 (-) False LOC110496267
XM_036952841.1 mRNA upstream 20328 41225685 ~ 41321792 (-) False LOC110496267
XM_036952840.1 mRNA upstream 20328 41225685 ~ 41327540 (-) True LOC110496267
XR_005037330.1 mRNA upstream 325386 41530743 ~ 41531326 (-) True LOC110496269
TU1772024 other downstream 295346 40905687 ~ 40908625 (-) True LOC118941164
TU1771911 other downstream 518330 40640175 ~ 40685641 (-) True G1548517
TU1771745 other downstream 812088 40385970 ~ 40391883 (-) True G1548367
TU1770684 other downstream 1515290 39684787 ~ 39688681 (-) True LOC110496816
TU1770675 other downstream 1555957 39642855 ~ 39648014 (-) False LOC110496816
TU1773336 other upstream 458079 41663436 ~ 41671514 (-) False LOC110496277
TU1773335 other upstream 462903 41668260 ~ 41671514 (-) True LOC110496277
TU1773748 other upstream 1109929 42315286 ~ 42316079 (-) True G1550177
TU1773779 other upstream 1153791 42359148 ~ 42359628 (-) True G1550202
TU1774432 other upstream 1689674 42895031 ~ 42897063 (-) False LOC118936491

Expression Profile