RNA id: TU1772622


Basic Information

Item Value
RNA id TU1772622
length 448
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G1549174
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 41458389 ~ 41458836 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctatttatgaaaatcgcaaatgaaatgaaataaatatgccatctctcaagcttagccttttgtaaacaacactgtcatctcagattttcaaaatatgcttctcaaccataggaaaacaatcatttgtgtaaaagtagctagctagagttagcatttcgcgttagcatttagcgttagcattagcgttagcatccagcacgcaacattaacaaaaacataaaagccttcaaataaaatcatttacctttgaagaacttctgatgttttcaatgaggatactctcagttagatagcagatgctcagtttttccaaaaatattccttgtgtattagaaatagctccgttttatacatcacatttggctaccaaaaaaaatccataaattcagtcctcaaaacgcaaacttttttccaaattaactccataatatcgactgaaaacatggca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1772598 lncRNA downstream 16529 41441605 ~ 41441860 (-) True G1549150
TU1772542 lncRNA downstream 64290 41393810 ~ 41394099 (-) True G1549096
TU1772523 lncRNA downstream 77640 41380494 ~ 41380749 (-) True G1549077
TU1772501 lncRNA downstream 94029 41364124 ~ 41364360 (-) True G1549055
TU1772494 lncRNA downstream 101633 41356472 ~ 41356756 (-) True G1549048
TU1772635 lncRNA upstream 9494 41468330 ~ 41468602 (-) True G1549187
TU1772642 lncRNA upstream 14482 41473318 ~ 41473554 (-) True G1549194
TU1772661 lncRNA upstream 26183 41485019 ~ 41485378 (-) True G1549213
TU1772689 lncRNA upstream 43182 41502018 ~ 41502293 (-) True G1549241
TU1773358 lncRNA upstream 159454 41618290 ~ 41644648 (-) True LOC110496274
XM_036952840.1 mRNA downstream 130849 41225685 ~ 41327540 (-) True LOC110496267
XM_036952838.1 mRNA downstream 136597 41225685 ~ 41321792 (-) False LOC110496267
XM_036952839.1 mRNA downstream 136597 41225685 ~ 41321792 (-) False LOC110496267
XM_036952841.1 mRNA downstream 136597 41225685 ~ 41321792 (-) False LOC110496267
XM_021572058.2 mRNA downstream 289257 41165539 ~ 41169132 (-) True ndufb9
XR_005037330.1 mRNA upstream 71907 41530743 ~ 41531326 (-) True LOC110496269
XR_002469624.2 mRNA upstream 73495 41532331 ~ 41533462 (-) True LOC110496931
XR_005037483.1 mRNA upstream 179418 41638254 ~ 41645613 (-) False LOC110496274
XM_036952844.1 mRNA upstream 191741 41650577 ~ 41661142 (-) False LOC110496275
XM_021572074.2 mRNA upstream 191741 41650577 ~ 41662848 (-) False LOC110496275
TU1772024 other downstream 549764 40905687 ~ 40908625 (-) True LOC118941164
TU1771911 other downstream 772748 40640175 ~ 40685641 (-) True G1548517
TU1771745 other downstream 1066506 40385970 ~ 40391883 (-) True G1548367
TU1770684 other downstream 1769708 39684787 ~ 39688681 (-) True LOC110496816
TU1770675 other downstream 1810375 39642855 ~ 39648014 (-) False LOC110496816
TU1773336 other upstream 204600 41663436 ~ 41671514 (-) False LOC110496277
TU1773335 other upstream 209424 41668260 ~ 41671514 (-) True LOC110496277
TU1773748 other upstream 856450 42315286 ~ 42316079 (-) True G1550177
TU1773779 other upstream 900312 42359148 ~ 42359628 (-) True G1550202
TU1774432 other upstream 1436195 42895031 ~ 42897063 (-) False LOC118936491

Expression Profile