RNA id: TU1773523


Basic Information

Item Value
RNA id TU1773523
length 238
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G1549971
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 41927335 ~ 41927572 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCCAATATCTGTGTTTTCACATGTACATTGATTGTTTCTGTGTTCTATACTAATCCAATCtgtacggtgccttcagaaagtattcacgacccctttcactttttccacattttgttgcgttacagcctaaAAGAATTTCAAATTaattcaattgagattgtgtgtcactaaactacacacaataccccataacgtcaaagtggaattctgtttttagaAATCcttacaaattaattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1773522 lncRNA downstream 177 41926729 ~ 41927158 (-) True G1549970
TU1773486 lncRNA downstream 4256 41901175 ~ 41923079 (-) True G1549942
TU1773484 lncRNA downstream 51885 41874057 ~ 41875450 (-) True G1549941
TU1773480 lncRNA downstream 54306 41872127 ~ 41873029 (-) True G1549939
TU1773427 lncRNA downstream 84278 41841712 ~ 41843057 (-) True G1549888
TU1773524 lncRNA upstream 398 41927970 ~ 41928469 (-) True G1549972
TU1773525 lncRNA upstream 2206 41929778 ~ 41930004 (-) True G1549973
TU1773529 lncRNA upstream 14154 41941726 ~ 41942166 (-) True G1549977
TU1773558 lncRNA upstream 44966 41972538 ~ 41972767 (-) True G1550006
TU1773573 lncRNA upstream 65281 41992853 ~ 41993106 (-) True G1550020
XM_021572089.2 mRNA downstream 86079 41829155 ~ 41841256 (-) False LOC110496284
XM_036952853.1 mRNA downstream 86079 41829155 ~ 41841256 (-) False LOC110496284
XM_036952854.1 mRNA downstream 86079 41829155 ~ 41841256 (-) True LOC110496284
XM_021572087.2 mRNA downstream 115176 41779561 ~ 41812159 (-) True LOC110496283
XM_021572086.2 mRNA downstream 175271 41723314 ~ 41752064 (-) True LOC110496281
XM_021572100.2 mRNA upstream 18690 41946262 ~ 41962098 (-) True LOC110496288
XM_021572102.2 mRNA upstream 82277 42009849 ~ 42014114 (-) False LOC110496289
XM_021572103.2 mRNA upstream 82277 42009849 ~ 42014114 (-) True LOC110496289
XM_036951048.1 mRNA upstream 100718 42028290 ~ 42035215 (-) True LOC110496292
XM_021572107.2 mRNA upstream 109702 42037274 ~ 42046633 (-) True LOC110496293
TU1773336 other downstream 255821 41663436 ~ 41671514 (-) False LOC110496277
TU1773335 other downstream 255821 41668260 ~ 41671514 (-) True LOC110496277
TU1772024 other downstream 1018710 40905687 ~ 40908625 (-) True LOC118941164
TU1771911 other downstream 1241694 40640175 ~ 40685641 (-) True G1548517
TU1771745 other downstream 1535452 40385970 ~ 40391883 (-) True G1548367
TU1773748 other upstream 387714 42315286 ~ 42316079 (-) True G1550177
TU1773779 other upstream 431576 42359148 ~ 42359628 (-) True G1550202
TU1774432 other upstream 967459 42895031 ~ 42897063 (-) False LOC118936491
TU1774437 other upstream 967459 42895031 ~ 42920357 (-) False LOC118936491
TU1774445 other upstream 967459 42895031 ~ 42920107 (-) False LOC118936491

Expression Profile