RNA id: TU1773749


Basic Information

Item Value
RNA id TU1773749
length 252
lncRNA type intronic
GC content 0.35
exon number 1
gene id G1550178
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 42317798 ~ 42318049 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ataaacttggattagctagcacaacgtgccattggaacataggagtgatggttgctgataatgggctataaaaaaatctgccatttccagatacaatagtaatttacaacattaacaatgtctacactttatttctgatcaatttgatgttattttaatggacaaaaatgtgcttttctttcaaaaacaaggacatttctaagtgaccccaaacttttgaacggtagaggCGTTCAGAAGAGGCGttggaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1773746 lncRNA downstream 3754 42313751 ~ 42314044 (-) True G1550175
TU1773741 lncRNA downstream 10099 42307477 ~ 42307699 (-) True G1550170
TU1773692 lncRNA downstream 26723 42289865 ~ 42291075 (-) True G1550124
TU1773712 lncRNA downstream 37811 42279649 ~ 42279987 (-) True LOC110496299
TU1773728 lncRNA downstream 46903 42270280 ~ 42270895 (-) True G1550157
TU1773752 lncRNA upstream 4622 42322671 ~ 42323020 (-) True G1550181
TU1773753 lncRNA upstream 9389 42327438 ~ 42327775 (-) True G1550182
TU1773754 lncRNA upstream 9934 42327983 ~ 42328243 (-) True G1550183
TU1773756 lncRNA upstream 13247 42331296 ~ 42331510 (-) True G1550185
TU1773757 lncRNA upstream 13948 42331997 ~ 42332369 (-) True G1550186
XM_021572119.2 mRNA downstream 20026 42291667 ~ 42297772 (-) True LOC110496300
XM_036952867.1 mRNA downstream 20282 42291667 ~ 42297516 (-) False LOC110496300
XR_005037488.1 mRNA downstream 20282 42291667 ~ 42297516 (-) False LOC110496300
XM_036952868.1 mRNA downstream 20289 42291667 ~ 42297509 (-) False LOC110496300
XM_021572118.2 mRNA downstream 30866 42279525 ~ 42286932 (-) False LOC110496299
XM_021570531.2 mRNA upstream 122296 42440345 ~ 42451777 (-) False stom
NM_001124593.1 mRNA upstream 122576 42440625 ~ 42451547 (-) True stom
XM_021572128.2 mRNA upstream 221278 42539327 ~ 42542965 (-) True LOC110496307
XM_021572130.2 mRNA upstream 237675 42555724 ~ 42565134 (-) False LOC110496309
XM_021572131.2 mRNA upstream 237675 42555724 ~ 42565137 (-) False LOC110496309
TU1773748 other downstream 1719 42315286 ~ 42316079 (-) True G1550177
TU1773336 other downstream 646284 41663436 ~ 41671514 (-) False LOC110496277
TU1773335 other downstream 646284 41668260 ~ 41671514 (-) True LOC110496277
TU1772024 other downstream 1409173 40905687 ~ 40908625 (-) True LOC118941164
TU1771911 other downstream 1632157 40640175 ~ 40685641 (-) True G1548517
TU1773779 other upstream 41099 42359148 ~ 42359628 (-) True G1550202
TU1774432 other upstream 576982 42895031 ~ 42897063 (-) False LOC118936491
TU1774437 other upstream 576982 42895031 ~ 42920357 (-) False LOC118936491
TU1774445 other upstream 576982 42895031 ~ 42920107 (-) False LOC118936491
TU1774449 other upstream 576982 42895031 ~ 42929252 (-) False LOC118936491

Expression Profile