RNA id: TU1773757



Basic Information


Item Value
RNA id TU1773757
length 373
lncRNA type intronic
GC content 0.60
exon number 1
gene id G1550186
representative True

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 42331997 ~ 42332369 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


taagtacccagggaataatggggaagatgggcgacacctggagggggttggagacaagcacaagaacaggtgaaacagatcaggtgtgacagtaccccccctctagggacgccacctggcgtcctacctgggcACATACCTGGTTGAGCGGGGTGCCGGCATTGGAACTCAGAGATGAggcctgggtccaggatgtccctagcggagacccagcacctctcctccgggccataaccgtcccagtcaaccaggtactggaatcccCTGCCCCGAGGTTGAACCTTCAGGAGGCGTCTCACCATGTATGCTGGTCGGCCGTCGATGAGACGAGGGAGAGGGGTGGacctggaaacaggagacaaagggttGTGAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1773756 lncRNA downstream 487 42331296 ~ 42331510 (-) True G1550185
TU1773754 lncRNA downstream 3754 42327983 ~ 42328243 (-) True G1550183
TU1773753 lncRNA downstream 4222 42327438 ~ 42327775 (-) True G1550182
TU1773752 lncRNA downstream 8977 42322671 ~ 42323020 (-) True G1550181
TU1773749 lncRNA downstream 13948 42317798 ~ 42318049 (-) True G1550178
TU1773758 lncRNA upstream 1120 42333489 ~ 42333794 (-) True G1550187
TU1773759 lncRNA upstream 1924 42334293 ~ 42334520 (-) True G1550188
TU1773761 lncRNA upstream 3913 42336282 ~ 42336508 (-) True G1550190
TU1773762 lncRNA upstream 4546 42336915 ~ 42337136 (-) True G1550191
TU1773763 lncRNA upstream 5488 42337857 ~ 42338157 (-) True G1550192
XM_021572119.2 mRNA downstream 34225 42291667 ~ 42297772 (-) True LOC110496300
XM_036952867.1 mRNA downstream 34481 42291667 ~ 42297516 (-) False LOC110496300
XR_005037488.1 mRNA downstream 34481 42291667 ~ 42297516 (-) False LOC110496300
XM_036952868.1 mRNA downstream 34488 42291667 ~ 42297509 (-) False LOC110496300
XM_021572118.2 mRNA downstream 45065 42279525 ~ 42286932 (-) False LOC110496299
XM_021570531.2 mRNA upstream 107976 42440345 ~ 42451777 (-) False stom
NM_001124593.1 mRNA upstream 108256 42440625 ~ 42451547 (-) True stom
XM_021572128.2 mRNA upstream 206958 42539327 ~ 42542965 (-) True LOC110496307
XM_021572130.2 mRNA upstream 223355 42555724 ~ 42565134 (-) False LOC110496309
XM_021572131.2 mRNA upstream 223355 42555724 ~ 42565137 (-) False LOC110496309
TU1773748 other downstream 15918 42315286 ~ 42316079 (-) True G1550177
TU1773336 other downstream 660483 41663436 ~ 41671514 (-) False LOC110496277
TU1773335 other downstream 660483 41668260 ~ 41671514 (-) True LOC110496277
TU1772024 other downstream 1423372 40905687 ~ 40908625 (-) True LOC118941164
TU1771911 other downstream 1646356 40640175 ~ 40685641 (-) True G1548517
TU1773779 other upstream 26779 42359148 ~ 42359628 (-) True G1550202
TU1774432 other upstream 562662 42895031 ~ 42897063 (-) False LOC118936491
TU1774437 other upstream 562662 42895031 ~ 42920357 (-) False LOC118936491
TU1774445 other upstream 562662 42895031 ~ 42920107 (-) False LOC118936491
TU1774449 other upstream 562662 42895031 ~ 42929252 (-) False LOC118936491

Expression Profile