RNA id: TU1773763


Basic Information

Item Value
RNA id TU1773763
length 301
lncRNA type antisense_over
GC content 0.50
exon number 1
gene id G1550192
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 42337857 ~ 42338157 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATATACGCATATACACAGTTTACACAAAGGCATAGATATACCAATCAACATTTCAACAGACACATATAAAGGCATTCAAAATAGACATTTGTGGCAAGGTAGGAACTAACATGCTTATTGATATAGAGATGGCACTAGAGGAGCACAGACCTGGCTCTTTCGCTGGCGTCGGTGCGGTGGACGTTGCTTAGCTGGCCCAGACAGAAGCGGTCGCCCCCTGAGGGGTCCACGTAGCCGTCCACCGTCACCACCGGGCAGCTAGCCGGCACCTTGAACATCTCCCCCACCTGCACATCCATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1773762 lncRNA downstream 721 42336915 ~ 42337136 (-) True G1550191
TU1773761 lncRNA downstream 1349 42336282 ~ 42336508 (-) True G1550190
TU1773759 lncRNA downstream 3337 42334293 ~ 42334520 (-) True G1550188
TU1773758 lncRNA downstream 4063 42333489 ~ 42333794 (-) True G1550187
TU1773757 lncRNA downstream 5488 42331997 ~ 42332369 (-) True G1550186
TU1773764 lncRNA upstream 217 42338374 ~ 42338599 (-) True G1550193
TU1773691 lncRNA upstream 1876 42340033 ~ 42345780 (-) True G1550123
TU1773690 lncRNA upstream 7749 42345906 ~ 42347312 (-) True G1550122
TU1773766 lncRNA upstream 9587 42347744 ~ 42347955 (-) True G1550195
TU1773767 lncRNA upstream 10221 42348378 ~ 42348592 (-) True G1550196
XM_021572119.2 mRNA downstream 40085 42291667 ~ 42297772 (-) True LOC110496300
XM_036952867.1 mRNA downstream 40341 42291667 ~ 42297516 (-) False LOC110496300
XR_005037488.1 mRNA downstream 40341 42291667 ~ 42297516 (-) False LOC110496300
XM_036952868.1 mRNA downstream 40348 42291667 ~ 42297509 (-) False LOC110496300
XM_021572118.2 mRNA downstream 50925 42279525 ~ 42286932 (-) False LOC110496299
XM_021570531.2 mRNA upstream 102188 42440345 ~ 42451777 (-) False stom
NM_001124593.1 mRNA upstream 102468 42440625 ~ 42451547 (-) True stom
XM_021572128.2 mRNA upstream 201170 42539327 ~ 42542965 (-) True LOC110496307
XM_021572130.2 mRNA upstream 217567 42555724 ~ 42565134 (-) False LOC110496309
XM_021572131.2 mRNA upstream 217567 42555724 ~ 42565137 (-) False LOC110496309
TU1773748 other downstream 21778 42315286 ~ 42316079 (-) True G1550177
TU1773336 other downstream 666343 41663436 ~ 41671514 (-) False LOC110496277
TU1773335 other downstream 666343 41668260 ~ 41671514 (-) True LOC110496277
TU1772024 other downstream 1429232 40905687 ~ 40908625 (-) True LOC118941164
TU1771911 other downstream 1652216 40640175 ~ 40685641 (-) True G1548517
TU1773779 other upstream 20991 42359148 ~ 42359628 (-) True G1550202
TU1774432 other upstream 556874 42895031 ~ 42897063 (-) False LOC118936491
TU1774437 other upstream 556874 42895031 ~ 42920357 (-) False LOC118936491
TU1774445 other upstream 556874 42895031 ~ 42920107 (-) False LOC118936491
TU1774449 other upstream 556874 42895031 ~ 42929252 (-) False LOC118936491

Expression Profile