RNA id: TU1773778


Basic Information

Item Value
RNA id TU1773778
length 313
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G1550201
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 42357725 ~ 42358037 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acatctcctccccgctgatcctcaacactggggccccacaagggtgcgttctgagccctctcctgtactccctgttcacccacgactgcgtggccacgcacgcctccaactcaatcatcaagtttgcggacgacacaacagtggtaggcttgattaccaacaacgatgagacggcctacagggaggaggtgagggccctcggagtgtggtgtcaggaaaacaacctcacactcaacgtcaacaaaactaaggagatgattgtggacttcaggaaacagcagagggaacacccccctatccacatcgatggaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1773777 lncRNA downstream 1065 42356386 ~ 42356660 (-) True G1550200
TU1773769 lncRNA downstream 7520 42349978 ~ 42350205 (-) True G1550198
TU1773768 lncRNA downstream 8152 42349295 ~ 42349573 (-) True G1550197
TU1773767 lncRNA downstream 9133 42348378 ~ 42348592 (-) True G1550196
TU1773766 lncRNA downstream 9770 42347744 ~ 42347955 (-) True G1550195
TU1773808 lncRNA upstream 50763 42408800 ~ 42409501 (-) True G1550231
TU1773814 lncRNA upstream 53690 42411727 ~ 42502927 (-) True G1550237
TU1773824 lncRNA upstream 63210 42421247 ~ 42423756 (-) True G1550245
TU1773810 lncRNA upstream 125557 42483594 ~ 42488418 (-) True G1550233
TU1773811 lncRNA upstream 141749 42499786 ~ 42501294 (-) True G1550234
XM_021572119.2 mRNA downstream 59953 42291667 ~ 42297772 (-) True LOC110496300
XM_036952867.1 mRNA downstream 60209 42291667 ~ 42297516 (-) False LOC110496300
XR_005037488.1 mRNA downstream 60209 42291667 ~ 42297516 (-) False LOC110496300
XM_036952868.1 mRNA downstream 60216 42291667 ~ 42297509 (-) False LOC110496300
XM_021572118.2 mRNA downstream 70793 42279525 ~ 42286932 (-) False LOC110496299
XM_021570531.2 mRNA upstream 82308 42440345 ~ 42451777 (-) False stom
NM_001124593.1 mRNA upstream 82588 42440625 ~ 42451547 (-) True stom
XM_021572128.2 mRNA upstream 181290 42539327 ~ 42542965 (-) True LOC110496307
XM_021572130.2 mRNA upstream 197687 42555724 ~ 42565134 (-) False LOC110496309
XM_021572131.2 mRNA upstream 197687 42555724 ~ 42565137 (-) False LOC110496309
TU1773748 other downstream 41646 42315286 ~ 42316079 (-) True G1550177
TU1773336 other downstream 686211 41663436 ~ 41671514 (-) False LOC110496277
TU1773335 other downstream 686211 41668260 ~ 41671514 (-) True LOC110496277
TU1772024 other downstream 1449100 40905687 ~ 40908625 (-) True LOC118941164
TU1771911 other downstream 1672084 40640175 ~ 40685641 (-) True G1548517
TU1773779 other upstream 1111 42359148 ~ 42359628 (-) True G1550202
TU1774432 other upstream 536994 42895031 ~ 42897063 (-) False LOC118936491
TU1774437 other upstream 536994 42895031 ~ 42920357 (-) False LOC118936491
TU1774445 other upstream 536994 42895031 ~ 42920107 (-) False LOC118936491
TU1774449 other upstream 536994 42895031 ~ 42929252 (-) False LOC118936491

Expression Profile