RNA id: TU1774123


Basic Information

Item Value
RNA id TU1774123
length 602
lncRNA type read_through
GC content 0.43
exon number 2
gene id G1550508
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 42640243 ~ 42723707 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gctcatcaccctgaacacaccatccccactgtcaaacatggtggtggcagcatcatggtttgggcctgcttttcttcagcagggacagggaagatggttaaaattgatgggaagatggatggagccaaatacaggaccattctggaagaaaacctgatggagtctgcaaaagacctgagactgggacggagacttgtcttccaacaagacaatgatccaaaacaaagcaaaatctacaatggaatggttcaaaaataaacatatccaggtgttagaatggccaagtcaaagtccagacctgaatccaatcgagaatctgtggaaagaactgaaaactgctgttcacaaatgctctccatccaacctcactgagctcgagctgttttgcaaggaggaatgggaaaaaatttcagtctctcgatatgcaaaactgatagagacataccccaagcgacttacagctgtaatcgcagcaaaaggtggcgctacaaagtattaacttaagggggctgaataattttgcacgcccaatttttcagtttttgatttgttaagtttgaaatatccaataaatgtcgttccacttcatgattgtgtcccac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1774027 lncRNA downstream 14216 42625795 ~ 42626027 (-) True G1550423
TU1774025 lncRNA downstream 15122 42624726 ~ 42625121 (-) True G1550421
TU1774018 lncRNA downstream 25659 42613695 ~ 42614584 (-) True G1550417
TU1773982 lncRNA downstream 51741 42581237 ~ 42588502 (-) True LOC110496309
TU1773875 lncRNA downstream 131390 42508595 ~ 42508853 (-) True G1550289
TU1774200 lncRNA upstream 36291 42759998 ~ 42760468 (-) True G1550583
TU1774204 lncRNA upstream 46543 42770250 ~ 42775103 (-) True G1550587
TU1774212 lncRNA upstream 57289 42780996 ~ 42781356 (-) True G1550595
TU1774213 lncRNA upstream 57768 42781475 ~ 42781750 (-) True G1550596
TU1774410 lncRNA upstream 64813 42788520 ~ 42797721 (-) False LOC110496315
XM_021572133.2 mRNA downstream 15737 42618074 ~ 42624506 (-) True LOC110496310
XM_021572132.2 mRNA downstream 51325 42555724 ~ 42588918 (-) False LOC110496309
XM_036952886.1 mRNA downstream 75105 42555724 ~ 42565138 (-) False LOC110496309
XM_021572131.2 mRNA downstream 75106 42555724 ~ 42565137 (-) False LOC110496309
XM_021572130.2 mRNA downstream 75109 42555724 ~ 42565134 (-) False LOC110496309
XR_005037489.1 mRNA upstream 64813 42788520 ~ 42796743 (-) False LOC110496315
XR_002469543.2 mRNA upstream 64813 42788520 ~ 42804428 (-) False LOC110496315
XM_021572149.2 mRNA upstream 135164 42858871 ~ 42866233 (-) True LOC110496317
XM_036951049.1 mRNA upstream 238269 42961976 ~ 42966016 (-) False LOC118936491
XM_036952898.1 mRNA upstream 271744 42995451 ~ 43005501 (-) True LOC110496326
TU1773779 other downstream 280615 42359148 ~ 42359628 (-) True G1550202
TU1773748 other downstream 324164 42315286 ~ 42316079 (-) True G1550177
TU1773336 other downstream 968729 41663436 ~ 41671514 (-) False LOC110496277
TU1773335 other downstream 968729 41668260 ~ 41671514 (-) True LOC110496277
TU1772024 other downstream 1731618 40905687 ~ 40908625 (-) True LOC118941164
TU1774432 other upstream 171324 42895031 ~ 42897063 (-) False LOC118936491
TU1774437 other upstream 171324 42895031 ~ 42920357 (-) False LOC118936491
TU1774445 other upstream 171324 42895031 ~ 42920107 (-) False LOC118936491
TU1774449 other upstream 171324 42895031 ~ 42929252 (-) False LOC118936491
TU1774433 other upstream 194551 42918258 ~ 42929452 (-) False LOC118936491

Expression Profile