RNA id: TU1774204


Basic Information

Item Value
RNA id TU1774204
length 214
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G1550587
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 42770250 ~ 42775103 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgttatggtgagtgaatgaggacccaaaagcgaactaacttaaacagagcttctttaataacaaaacataagtaggctcagatagaccggcagattccgacaggacaggacaaggttacagcaaacatgacgatagtctggctcaggcatgaaacacaaacaaacaaacaagaatccgacaaggacaggagcagaaacagagggagatatagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1774200 lncRNA downstream 9782 42759998 ~ 42760468 (-) True G1550583
TU1774172 lncRNA downstream 22898 42701324 ~ 42747352 (-) True G1550556
TU1774123 lncRNA downstream 46543 42640243 ~ 42723707 (-) True G1550508
TU1774179 lncRNA downstream 60090 42707458 ~ 42710160 (-) True G1550563
TU1774134 lncRNA downstream 85391 42683313 ~ 42684859 (-) True G1550519
TU1774212 lncRNA upstream 5893 42780996 ~ 42781356 (-) True G1550595
TU1774213 lncRNA upstream 6372 42781475 ~ 42781750 (-) True G1550596
TU1774410 lncRNA upstream 13417 42788520 ~ 42797721 (-) False LOC110496315
TU1774411 lncRNA upstream 13417 42788520 ~ 42797721 (-) True LOC110496315
TU1774423 lncRNA upstream 39029 42814132 ~ 42814334 (-) True G1550738
XM_021572133.2 mRNA downstream 145744 42618074 ~ 42624506 (-) True LOC110496310
XM_021572132.2 mRNA downstream 181332 42555724 ~ 42588918 (-) False LOC110496309
XM_036952886.1 mRNA downstream 205112 42555724 ~ 42565138 (-) False LOC110496309
XM_021572131.2 mRNA downstream 205113 42555724 ~ 42565137 (-) False LOC110496309
XM_021572130.2 mRNA downstream 205116 42555724 ~ 42565134 (-) False LOC110496309
XR_005037489.1 mRNA upstream 13417 42788520 ~ 42796743 (-) False LOC110496315
XR_002469543.2 mRNA upstream 13417 42788520 ~ 42804428 (-) False LOC110496315
XM_021572149.2 mRNA upstream 83768 42858871 ~ 42866233 (-) True LOC110496317
XM_036951049.1 mRNA upstream 186873 42961976 ~ 42966016 (-) False LOC118936491
XM_036952898.1 mRNA upstream 220348 42995451 ~ 43005501 (-) True LOC110496326
TU1773779 other downstream 410622 42359148 ~ 42359628 (-) True G1550202
TU1773748 other downstream 454171 42315286 ~ 42316079 (-) True G1550177
TU1773336 other downstream 1098736 41663436 ~ 41671514 (-) False LOC110496277
TU1773335 other downstream 1098736 41668260 ~ 41671514 (-) True LOC110496277
TU1772024 other downstream 1861625 40905687 ~ 40908625 (-) True LOC118941164
TU1774432 other upstream 119928 42895031 ~ 42897063 (-) False LOC118936491
TU1774437 other upstream 119928 42895031 ~ 42920357 (-) False LOC118936491
TU1774445 other upstream 119928 42895031 ~ 42920107 (-) False LOC118936491
TU1774449 other upstream 119928 42895031 ~ 42929252 (-) False LOC118936491
TU1774433 other upstream 143155 42918258 ~ 42929452 (-) False LOC118936491

Expression Profile