RNA id: TU1774475


Basic Information

Item Value
RNA id TU1774475
length 239
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G1550769
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 42855711 ~ 42855949 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cggaagtttacatataccttagccaaaaacatttaaacttactttttcacaattcctgacatttattcctagtaaaaattccccatcttaggtcagttaggatcaccgctttattttaagaatatgaaatgtcagaatagtgatttatttcatcattttcccagtgggtcagaagtttacattcactcaattagtatttggtagcattaacttgtgtcaaacattttggctagccttcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1774423 lncRNA downstream 41377 42814132 ~ 42814334 (-) True G1550738
TU1774410 lncRNA downstream 57990 42788520 ~ 42797721 (-) False LOC110496315
TU1774411 lncRNA downstream 57990 42788520 ~ 42797721 (-) True LOC110496315
TU1774213 lncRNA downstream 73961 42781475 ~ 42781750 (-) True G1550596
TU1774212 lncRNA downstream 74355 42780996 ~ 42781356 (-) True G1550595
TU1774498 lncRNA upstream 40142 42896091 ~ 42963338 (-) True G1550790
TU1774456 lncRNA upstream 43955 42899904 ~ 42933030 (-) True G1550750
TU1774501 lncRNA upstream 49479 42905428 ~ 42938066 (-) True G1550793
TU1774508 lncRNA upstream 87112 42943061 ~ 42953940 (-) True G1550800
TU1774571 lncRNA upstream 229835 43085784 ~ 43086352 (-) True G1550861
XR_002469543.2 mRNA downstream 51283 42788520 ~ 42804428 (-) False LOC110496315
XR_005037489.1 mRNA downstream 58968 42788520 ~ 42796743 (-) False LOC110496315
XM_021572133.2 mRNA downstream 231205 42618074 ~ 42624506 (-) True LOC110496310
XM_021572132.2 mRNA downstream 266793 42555724 ~ 42588918 (-) False LOC110496309
XM_036952886.1 mRNA downstream 290573 42555724 ~ 42565138 (-) False LOC110496309
XM_021572149.2 mRNA upstream 2922 42858871 ~ 42866233 (-) True LOC110496317
XM_036951049.1 mRNA upstream 106027 42961976 ~ 42966016 (-) False LOC118936491
XM_036952898.1 mRNA upstream 139502 42995451 ~ 43005501 (-) True LOC110496326
XM_021572155.2 mRNA upstream 372982 43228931 ~ 43258006 (-) True LOC110496330
XR_005037490.1 mRNA upstream 627472 43483421 ~ 43517409 (-) True LOC110496334
TU1773779 other downstream 496083 42359148 ~ 42359628 (-) True G1550202
TU1773748 other downstream 539632 42315286 ~ 42316079 (-) True G1550177
TU1773336 other downstream 1184197 41663436 ~ 41671514 (-) False LOC110496277
TU1773335 other downstream 1184197 41668260 ~ 41671514 (-) True LOC110496277
TU1772024 other downstream 1947086 40905687 ~ 40908625 (-) True LOC118941164
TU1774432 other upstream 39082 42895031 ~ 42897063 (-) False LOC118936491
TU1774437 other upstream 39082 42895031 ~ 42920357 (-) False LOC118936491
TU1774445 other upstream 39082 42895031 ~ 42920107 (-) False LOC118936491
TU1774449 other upstream 39082 42895031 ~ 42929252 (-) False LOC118936491
TU1774433 other upstream 62309 42918258 ~ 42929452 (-) False LOC118936491

Expression Profile