RNA id: TU1776616


Basic Information

Item Value
RNA id TU1776616
length 4590
RNA type TUCP
GC content 0.43
exon number 4
gene id G1552768
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 44820763 ~ 44828808 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATCTGTATGATCCTCATATCACTTTGTTTCTgtatattgagatttaaaatgCCATTAAAGTAAGCAAATTACTCACTGATTGACTGTAGTATAGCATTGCTTCATATCACAATAGAAATTCCATTCATTTGGTGGAGGTGAAAAATGTTTGCTAACAAAATACTTTTCAACTTTTGCAATTTATGAATATTTTTCTAAGGAAACCAGTAGGGTTTTATTGTGAAACGTTCCTATAATTATAATGACATTTCAGAATAGAGCTAGGCTTAAGAAAATAATGGTgattgtaaaaatgtatgttgCCATGGATACTCCATGGCACTGCCTGAAACAGAGCTGTCAAGCTATAAAAACTCAGAGTGGAAGACTCATGAATAACGGATGCCTTCACTTGAAACTTCAAACATAAGGTCATATTCATTGGGCACCAAACAGAAatcagactgaaacagggagtgaCTACATGGACATTGCAAATGCCCTAatgcagtggttctcaaacttttTCAATTTTTCACTCGGGCCAGGGCTCTAGACTAACTTTTTCAGTTGATGGCACCAGCACATGATTTGGTCACACCAATGATGACCTGACCTGTGTTCCATAATGTACATGcattccatacagaaccaggctaatgatgatttttttttaagtagaaTGCCATTGCATGGCTTGACATTCAGGCAAATTTGCCTGTGGCACACCAGGCCAGTGCCAACTGAAAGCTACTGGCCTGAATGAAAACAATACTGGCCCGGGAAAGCAGATGATGCGCACATCatttacattttatatttaatTTTCAGGCTGAGTAAGTAGTCTGTTGCCTATAATGACCTACCCTACATTCACAAAATTACATTTTACATTGATTGTTAAGAGGAGTAAAAAATCTACCCTTTGCACAATCTCAAAAAGGGTGTTATTGTCAGCGATTTTGAACAGTCACTCCACAGTTATTGGACCCTATAAAATCAATTTTATATTTTGGAAAATTCTGTTTTCCTGGTtagatttttcccgattttcatTCTCAAAATCACACTTATTTTGTTAATAGAAAAACTAGTctacaacaatgcttaaaccacatcaggagaccacttttaaGGTCTGGGAACAATTATAATTTGGAGGGTGTAGTTGCTCTTTCATTCAATTGTACACCTAGCAAGAGACTTGTGTTTGGCTAGCTTTGTTTTTGTACTGTACAATGTACAGTGTAAGCTACATGTGATggcagagtttgcaaaacaaatgcccAGCAATTGATACAAATCATCATGATATATTTCTGCCAGGGTGTAGTTTCCCCTTAATTCAACTGTGCACCTATCAAGAGACCGTTGTGTTTGGCTAGCAGTATTTTTGTACTGTACAATGTATAGTGTAGTTTTCATGTGATggcagagtttgcaaaacaaatgccccaCGACTGATACAAatcatcatgatatcattctgccaggtaggtcTACCCAGCAGTCAAATTTTAATTGGAAAGTTTTTTTGGGGAAACCTTACGAAAGTTTAATTCAAAACAGTGCATGATGACTGATTTGTGCATTGCAAAGATTCAGCCAAGACTTCGGACCAAACCTTTTGAATACCTGGTCTGCATACCAATTGTTGCAAAACGATTACTGGTTGAATAAATATTGATAAAAGGAAAAGCTCATTGTGAACCAAAAACGAACATGACCAGCTACATTTATTTCACTGGCACCAAAGTGACCAATAAAAAATTGGTGTCTCACTGCTAATTCAAAGGGTCCCCTgctctaatgaacatgacccagcttTAAGCGATCATAAGCCTATATTAAAAATGACTAGAACTGCTAATCTATCTTCAATATTTGTTTATTTGGGTTGACCAGTATGTTGGCATGACATGACACTGTAAAATGGCCAGCTAACCATGAACTTCAGTCTACAATGTTATTGGCACAATTAACCTTCATAGCTGGATTGATTTATCTCTGTGGTGCCACTCGTATGACAAATCAGGGCCATAACCTCATAAGCACTAAAATATCACTGCGGGCATCCTCTTCAAATAACAACGATGGTACAAACCCCTATTTCTATTTAGGGCACCTCCAGAGTGTAATATGGAATTGAACCCTGCCTATAAAAAGTATATGGTAAATAATTCTCACAACAAATTTCCGTTTGATCAGTTAGTTGAAGCATGGTGCTACCAACACAGGggctgaatcctactacaccggctctgacgctcttcggatgtggcagggcttgcaaactatcacggattacaaatgGAAACCCAGGAGTGCGCTGTCCAGTGATGCAAgcttaccagatgagctaaataccttctatgctcgctttgaggctaGCAACAcaaaccatgcatgagagcaccagctgtcccGGACGGCAGGGAGAGAGgatcctgggattaaacacctccctctgcaactgtatcctggacttcctgatgggccgcccccaggtggtgagggtaggcaacaacactgtCACggtgaccctcaacacgggggcccctcagggatgcgtgcttagtcccctcgtgtactctctgttcaccttCACCCAGAACTGCGTGGCCGTGCACAACCTCAACATTATCATTAAGTCTGCCAATACGACAGTAGTACGCCTGATCACCTGGAAGTGTGGttccaggaaaacaacctctccctcaatatcagcaagacgaaggagctgatcgtggactacaggaaacggaggggcgAGCACTCCCACATCCACATCAACGGAGTtgtagtggagtaggttgagagcttcaagttcctcggtatccacatcactaaggaatcgtcatggtccacacacaccaacacagatgtgaagagggcacaacaacgtcTCTTGAAAAGAgtcggcatgggccctcaaaaagttatacagctgcaccattgagagcatcttgactggctgcatcaccgcctggtatggcaactgcttggcattccACTGCAAGGCGCAagggtagtgcgtaaggcccagaacatcactggggccaagctccgtgtcatccaggacctctatactaggcgttgtcagaggaaggcacaaaactgtctaagactccagccaaccaagtcatagactgttctctctgctactgcacggcatgCGGTACCgatgtctggaaccaacaggaccctgaacaccttctaccctcaagccataagactgctaaatagttaaccaatagctaccccgACAATCTGCATTGACCATTTTTGCatgaactcttttgactcatcacatactctGCTGCTGTTTATCTAtcttgttgcctagttactttatccctacctacatgtacagtacagtcaaacgtttggacacacctactcattcaagggcttttctttctttttacatttttctacattgtagaataatagtgaagacatcaaaactatgaaaaaacacatatggaatcatgtagtaaccaaaaaagtcttaaaTCAATCAAAATATACtctatattttagattcttcaaagtagcacgcttcgccttgatgacagttttgcacactcttggcattctttcaaccagcttcacctggaatgcttttccaacagtcttgaaggagttcccacatatgctgagctcttgttggctgcttttccttcactctgcattccaactcatcccaaaccatctcaatttggttgagattgggtgattgtggaggccaggtcatctgatgcagcaatgcatcactgtccttcttggtcaaatagcccttacatagcctggtggtgtgttgggtcaacttttgactggtactgtacatatctacttcaattacctcatacccctgcacatcaactcggtactggttccccatgtatatagccaagttatcattactcattgtgtatttatttattccttgtgttataatTTCTCTATTATTTCAATGTTTTTCTCTCTGTACAGTTGgaaagggcccataagtaagcatttcactgttagtctacaccttgATTTGATTCCCACACATGAACCATGCTCACAATGAGCAATCTTGCCTGCGTCCCGAAGACTTCTGTTAGCTTCCCGAGCTAAGGACTTGGCTTTACTGTAGCTCAGCGCATGACTTTAGCTTGGGTTTGTGGCACATGGGAGACCTTGGTTCTAAGCCTGGTAGACCACAGTAAATTATTAGGACCTCACCTTTGCTGCTGGGGACCCGTGCGTTCCATTGACAACCACCTCCTGACCGTTGATCACTAGCGCCCCTGTGTGGTTCGGGTGACCGTTGAAACTGCAGGGCAGAGGCATTTCAAAGGTGGAGCCCAGGAGTAGCTCACTCAGCCTATCCACCTCTGCGATGGCATCAGTGAGCAATCTCTCGCCGAGTGGCGCATGGGGCGTGTCGGCCCGGAACAGGTTCCGGGAGTTGGGGCCCCCCGGCAGCATGACCTCCTGACCCCCCGTCACCTCAGCCAGGTCCGAGAACAATGTGACCCGCTCCTGGAGCAGCTCCAGCACCTCCCGGTCCTTCTGCTGGATGTCCGCTGGAAGGAGAGATGAAAGTGGAAAGAGGAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1776548 lncRNA downstream 104159 44708042 ~ 44716604 (-) True G1552703
TU1776545 lncRNA downstream 112833 44707166 ~ 44707930 (-) True G1552702
TU1776499 lncRNA downstream 126284 44684653 ~ 44694479 (-) True si:ch73-109i22.2
TU1776538 lncRNA downstream 144653 44675802 ~ 44676110 (-) True G1552696
TU1776524 lncRNA downstream 160551 44659947 ~ 44660212 (-) True G1552682
TU1776624 lncRNA upstream 16475 44845283 ~ 44856861 (-) True LOC110496357
TU1776608 lncRNA upstream 38641 44867449 ~ 44868046 (-) True G1552760
TU1776605 lncRNA upstream 61862 44890670 ~ 44892103 (-) True G1552759
TU1776642 lncRNA upstream 65530 44894338 ~ 44895008 (-) True G1552794
TU1776649 lncRNA upstream 76930 44905738 ~ 44906050 (-) True G1552801
XM_021572196.2 mRNA downstream 117671 44694331 ~ 44703092 (-) False si:ch73-109i22.2
XM_021572852.2 mRNA downstream 165838 44630766 ~ 44654925 (-) True LOC110496833
XM_021572192.2 mRNA downstream 283620 44487269 ~ 44537143 (-) True LOC110496351
XM_021572193.2 mRNA downstream 311854 44487269 ~ 44508909 (-) False LOC110496351
XM_036952922.1 mRNA downstream 334036 44477196 ~ 44486727 (-) True LOC110496350
XM_036951390.1 mRNA upstream 109322 44938130 ~ 44943098 (-) True LOC110496937
XM_021572215.2 mRNA upstream 513195 45342003 ~ 45347556 (-) True LOC110496360
XM_021572216.2 mRNA upstream 540761 45369569 ~ 45372973 (-) True LOC100499581
XM_021572227.2 mRNA upstream 647127 45475935 ~ 45562167 (-) False LOC110496365
XM_036952932.1 mRNA upstream 647127 45475935 ~ 45562167 (-) False LOC110496365
TU1775356 other downstream 1187886 43631006 ~ 43632877 (-) True LOC118940987
TU1774438 other downstream 1805644 42961990 ~ 43015119 (-) False LOC118936491
TU1774440 other downstream 1805644 42961990 ~ 43015119 (-) False LOC118936491
TU1774442 other downstream 1805644 42975998 ~ 43015119 (-) False LOC118936491
TU1774436 other downstream 1805644 43013202 ~ 43015119 (-) True LOC118936491
TU1776725 other upstream 218872 45047680 ~ 45087786 (-) False G1552866
TU1776762 other upstream 236326 45065134 ~ 45073340 (-) True G1552875
TU1777490 other upstream 838553 45667361 ~ 45667740 (-) True G1553544
TU1777651 other upstream 959291 45788099 ~ 45792133 (-) False G1553693
TU1777652 other upstream 959291 45788099 ~ 45803048 (-) True G1553693

Expression Profile