RNA id: TU1776734


Basic Information

Item Value
RNA id TU1776734
length 409
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id G1552866
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 45047680 ~ 45087786 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gatgcccctgctacaacaactgttcctgctacaactgccataacaacggcacctcctccagtggtggaattacaagtcaccttgcagcaagcttttgtaccagccttgactgaccctcaaagcacagaattcaaaacactatcagttaccattactacaatttgtgacacaatattccgagaaagatatgggcttagtttcgttcagacgactgttactcaattcagacctgtgcctcgtctcggtcaggatcctaacacagaggtggacttggaactggagttcaatgcgacctccacagtacctatccccaagggcagtgacattgttgaaacattgaaagaggctgtgaccaatccaaactctaacttcaacttatctttggatctgaactccatcactgtgataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1776754 lncRNA downstream 48650 44960959 ~ 44999030 (-) True G1552868
TU1776658 lncRNA downstream 134867 44912557 ~ 44912813 (-) True G1552810
TU1776649 lncRNA downstream 141630 44905738 ~ 44906050 (-) True G1552801
TU1776642 lncRNA downstream 152672 44894338 ~ 44895008 (-) True G1552794
TU1776605 lncRNA downstream 155577 44890670 ~ 44892103 (-) True G1552759
TU1776763 lncRNA upstream 14747 45075844 ~ 45082410 (-) True G1552876
TU1776780 lncRNA upstream 49896 45110993 ~ 45111199 (-) True G1552891
TU1776781 lncRNA upstream 50847 45111944 ~ 45112330 (-) True G1552892
TU1776790 lncRNA upstream 56054 45117151 ~ 45117422 (-) True G1552901
TU1776801 lncRNA upstream 59935 45121032 ~ 45121374 (-) True G1552912
XM_036951390.1 mRNA downstream 104582 44938130 ~ 44943098 (-) True LOC110496937
XR_002469547.2 mRNA downstream 190946 44818544 ~ 44856734 (-) False LOC110496357
XM_021572196.2 mRNA downstream 344588 44694331 ~ 44703092 (-) False si:ch73-109i22.2
XM_021572852.2 mRNA downstream 392755 44630766 ~ 44654925 (-) True LOC110496833
XM_021572192.2 mRNA downstream 510537 44487269 ~ 44537143 (-) True LOC110496351
XM_021572215.2 mRNA upstream 280906 45342003 ~ 45347556 (-) True LOC110496360
XM_021572216.2 mRNA upstream 308472 45369569 ~ 45372973 (-) True LOC100499581
XM_021572227.2 mRNA upstream 414838 45475935 ~ 45562167 (-) False LOC110496365
XM_036952932.1 mRNA upstream 414838 45475935 ~ 45562167 (-) False LOC110496365
XM_036952935.1 mRNA upstream 795636 45856733 ~ 45876685 (-) False LOC110496374
TU1776616 other downstream 218872 44820763 ~ 44828808 (-) True G1552768
TU1775356 other downstream 1414803 43631006 ~ 43632877 (-) True LOC118940987
TU1774440 other downstream 2032561 42961990 ~ 43015119 (-) False LOC118936491
TU1776762 other upstream 4037 45065134 ~ 45073340 (-) True G1552875
TU1777490 other upstream 606264 45667361 ~ 45667740 (-) True G1553544
TU1777651 other upstream 727002 45788099 ~ 45792133 (-) False G1553693
TU1777652 other upstream 727002 45788099 ~ 45803048 (-) True G1553693
TU1778112 other upstream 1040151 46101248 ~ 46108102 (-) True G1554091