RNA id: TU1777651


Basic Information

Item Value
RNA id TU1777651
length 3981
RNA type TUCP
GC content 0.49
exon number 2
gene id G1553693
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 45788099 ~ 45803048 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTTTATTCTGCACAATTCTGCCACAATGCATCAGCAGGCTCAAACCTTCaagactaaatacattttttgctTCTCAAGGACTGAAAACATAGAAAACCCAAcaggtatacagtacatacacctaACAATCAATTGCAAATGAGACAGGAAGTAGtagaaacaaagacaaaaaaagaACAAACTCATAGCACACTAGTCAAACTTCTTCCAAGGAGGGCCAAGTGTATGCAGGTTTTCGCTCCACCTTGTACTCGACTGATGAATTAaagtcactaattagtaaggagcccccctcacctggttgtctaggccCTAAttgaaaattaaaaaaaacagcagACTCTAGTCTAAGCCCTCCATGGAGTGAGTTTGACATCCTTGCCATAGATTAATTAACATGTGAAAATGGTAAAAACACCAGGTGAGGTATTCTGTTATCCAAAAATATTAACATTCAACAAAGTGAGTGGACAAAACAGCAAATTAACAAGGGTGAGGAAAGCAAAGTTGAAAGTGATGGAGGCTATGGAAAAATGCAGTATCTGAGCGTACTCATTACGATCCATTACGTAGTTTCAATAAAGGGAAAGAATAGCACAGCTGTTGATACACATTCTGAAAAGAAAAAGCTAGACAGAATCTTACAGTTATGATTATACTCAGTCTCATCTGGTCAATGGACTCATAAACACATAATAGATTTGAGTTTCTATTGAGAACGGTGGCCAGTAACTATCATACAAAATGACATCACTAACAGAAAAAAGGTATTCTGATAAACATTTACACATACTGTCCATTAAGTTTTGAACAGGAGAGTTAATAGTTTAGTTGCTTAAAAAGTCAGTAATCAATTATCCCAGTTTGTATAGTATGAGTATTCCATAATACAGGTGTACTTTATAGCTTTAACAGTTAAGACCGTATTTCAAAACAAGCAGCAAGTAaaatatccttcaaactgaatcATGGTCAATGGGCTGAAAAACATCTCTAAACGATGCCCCCTAGAAATAAAATGGTGGATTTAACCATGTGTTGGTTGTATGTAACACAGCTCTCGGAACCAACCCCTGAAAACGGAGTGTCACTCAGAATCAATACCCTTCGTTGAACTAATAAATTCCTggctttatatatatttttttacacttaTACAGAGGTTTGTTCTAACATGTAGCCTGTGAGAATGTCAACATTTGAATTACAGTTCTACGAAAAGGAGAATAATAAGTAAACACCTCAAATTAAGTTGACATTTAATCTTGACAACACTAGCAGGCAGCTCAACATCAATATAAAAGTATACATTTCAGGGCACTGCAATCTGCTGCAGTCAGCCAGGTAAAGGGATCTATATACACTGTACATGTACTCTGAAGTGACAACTCAGACAGCCACCGGCTCTGGTTCTAAAGGATCCATCTCTGGAACATCCTGATGTGGTTCTAAAGGATCTTCTTCTGGAAGAGACATTTCTGGTTCTGCTGGTTCCACATCTGGGATGATGAGGTCGTGCTTAAGTTTCTTCAGCTCAGTCATGTTGAAGCCCATGAAGATGGTAGGGCTGTTCCTCTGGATCGCCTTCATGCACTTGGTGCGCTTCATTCCAAACAGAGTGGACACCTCAGTCCGGGTCAGCCACAGTCTCTTGGAGAGCTCCTCAGACTCCTTCTTTGTGGGATACGGCTTGGTGTGAAAGTATCTTGTGAGGAAGTCTTTCCGCTCCTCAGAGGGGCGTTTCTCCATCCCACTGGGGTCCAGGGCTAGCTGAATAGAGGGGTCAGTCAGGGGTGCCTGCTCTCGTTTCTCCTTCTCTCGTTGCTTGCGGAAGGCTGCCCGCGCATCCCTCTCTTTCTTGTTGGCCTCCATGGCCTCCCTGAAGGCTGCCTCCAGCCTCAGCTTGCTCTGCAGCTCAGCAGGTGACTCGGAGGAGTGGGGGATGGGGACGGAGGGCTTCGCTGCCATGGGGACGGGAGGGAGCTGGGTAGAGTACCGACCTGGCACCTGGATCATCTGGTTAAAGGCCATGACCTGCTGCTGGCGTCCGTTGGTGGGGGTGGACTGGAGACTGTCTGCATCTGTAGGGGTCTTGGGTGCACGGCGGCACCGCTGTAGATGGATGATTATAGCTTTCTGCGTGGTCTTGCCTGTGTAAACGCCGTTGCAGTAGATGCATTTGAATGCTGAGGTCTTGAGGATGGCATGGACAGTGGGCGCAATGCAGTGCTTCCCACTCAGATGGGCCCGGTAGTTCTCCAGTGTGACACACTTCTCTTCACAGAAGGGGCAGTCGGTCTGCATCGTTTTACTGGGGTTCCGACACACTTCCTGTTTACCACCAGGTTGCATCTTGAGGAAGATCAGGTCCAGGGAGTTCGTGACCAGAGCTAATTTCAGTTCTGCGTCTCCTAGGATTTCTTTGGGGGCCGTGGTGTTAATGTCAAAGTAGGGGAACAGAAGGTTACCGCTGTCGTCTGTGTACAGTCTATACTCCCGCCTCATGAAGTCACAGTTGGCCTTCTGTGtggggttgtgttgtgtgtttgtgtgttcaacCAGTTGTTGGATGGAGTAGAACATCccaggacagtagagacagttgaGCCCGTGCAGCAGGTGTTCAAAGAGGCCCTTCTCAGACAGGAGGATCTTACACTTCAAACACTTGACTGTCTTGTCAGGCATCTTCCTGAGGAAGGGAGCACGGGCAGCCAGGCCCTGCTGCTTGGCTGTTCTGGGCTGGGCCTTGTGGGCAGCCTGCTGGTGAGCCTCATAGACATTGGAGGGGAGCAGTTCATTACAGATGGGACAGGTGATCCACTTCTTGGCTTTGGCGTTGAGAGCGGGGTTACCTGCTGGTTTGATGGGTTGAGGAGCCTTGCTCATCAGCTGGACGTTGCTCGTCTGGCCGGGCATGCCCATTGGTGTTGCGAAGGTGTAGGTGGGCATGCCGTTGACCTTGTTGCCTGTGGGGATGAGGTGGCTGAGGAGGGACTGGGAGGTCAGCATGGTGCCCTGAGGGGTGCTCTGGAGAATGGTACTCTGGGGGGTCCCATGGTTCAGGGGGAGGCGCTGAGTCATCATGAGGGACTGGGACATCCCTGGAATGCTGATCTGCACCCTCGGGGGCAGGAAGACCTGCTGGGGCTGCTGCTGACCTTGGACCCCTATGAAAGGCACCTGGTTGTGAGGAGCACCAGGTAGCGAGGTGCCAGAGGGCAGTCTGACCATGGTCTGGCCGATGGGCATGGTGGCTGAGATGGCCCCCTGTGGCATAGCACTCTGCAGGTTGACAGTAGCACCAGGCTGGAGGAGGCCTTTAGCATTAGCACCGGCCATATGAACCAGGGTTGAAGACTGTGGGGGGAGGAAGCTCTGTTTGGCCCCGGCCAGCTGCTCAGGACTGGATACCTGTGGCAGCTGGTTTTTAGGGGCCAGTGTTTGGTAATTTGAAGGCTTGGTGTACTGAGTGTTCTCTAAGATCCAGGTCCTTATCTGAGCGCAGGCCCACTGGTGAGTGGGAGAGGACAGGATATGGTGCAGCATGTGCTCCGTGCTTTCGATGGCCATCTTACACACCTTACAGAACTgcctggaggctgtatgggggaactTAGTGTCTGGTATCCGTCCTGAGAAGTGGTGCCACAGCTTCTCCAGGTGGTTAAGCAGGACGTGCTTCTTCATTGAGAACAGGTTTGAGTCCACATATCGGCACTTACGACACTTAAACCGGTCCCCTTTCTTGGTAGTTGAATGCAGAGACTCTGCATCCTGGTCCATGTTCGGAGAgccatggaagaggaggaggtgcttCTTGAGGACTCGGGGGTGGGCGACAAAGGGGCAGATCTGGCAGGGAGCCAGGACACACAGTTTCCTCTCATACTCATGGTTCCGCTGCAGATGACTCTTGTAGGAGTACCAGTTCCGTGTAGAGTACTTACAGAGGGTGCAGCACAACAGCCGTGTGCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1777477 lncRNA downstream 128125 45659662 ~ 45659974 (-) True G1553532
TU1777468 lncRNA downstream 136617 45651240 ~ 45651482 (-) True G1553523
TU1777448 lncRNA downstream 158092 45629766 ~ 45630007 (-) True G1553503
TU1777417 lncRNA downstream 194045 45593786 ~ 45594054 (-) True G1553473
TU1777285 lncRNA downstream 268783 45475947 ~ 45519316 (-) True LOC110496365
TU1777664 lncRNA upstream 8818 45800951 ~ 45802614 (-) True G1553701
TU1777684 lncRNA upstream 41578 45833711 ~ 45833951 (-) True G1553721
TU1777991 lncRNA upstream 57851 45849984 ~ 45850330 (-) True G1553988
TU1777993 lncRNA upstream 59294 45851427 ~ 45851740 (-) True G1553990
TU1778029 lncRNA upstream 111200 45903333 ~ 45903538 (-) True G1554026
XM_021572227.2 mRNA downstream 225932 45475935 ~ 45562167 (-) False LOC110496365
XM_036952932.1 mRNA downstream 225932 45475935 ~ 45562167 (-) False LOC110496365
XM_021572216.2 mRNA downstream 415126 45369569 ~ 45372973 (-) True LOC100499581
XM_021572215.2 mRNA downstream 440543 45342003 ~ 45347556 (-) True LOC110496360
XM_036951390.1 mRNA downstream 845001 44938130 ~ 44943098 (-) True LOC110496937
XM_036952935.1 mRNA upstream 64600 45856733 ~ 45876685 (-) False LOC110496374
XM_021572235.2 mRNA upstream 64601 45856734 ~ 45890268 (-) True LOC110496374
XM_036952937.1 mRNA upstream 119723 45911856 ~ 46028766 (-) False LOC110496375
XM_036952936.1 mRNA upstream 119723 45911856 ~ 46028798 (-) False LOC110496375
XM_036952938.1 mRNA upstream 119723 45911856 ~ 46028798 (-) False LOC110496375
TU1777490 other downstream 120359 45667361 ~ 45667740 (-) True G1553544
TU1776725 other downstream 700313 45047680 ~ 45087786 (-) False G1552866
TU1776762 other downstream 714759 45065134 ~ 45073340 (-) True G1552875
TU1776616 other downstream 959291 44820763 ~ 44828808 (-) True G1552768
TU1775356 other downstream 2155222 43631006 ~ 43632877 (-) True LOC118940987
TU1778112 other upstream 309115 46101248 ~ 46108102 (-) True G1554091
TU1779304 other upstream 1119844 46911977 ~ 46912915 (-) True G1555168
TU1779770 other upstream 1751427 47543560 ~ 47546571 (-) False G1555543
TU1780537 other upstream 2112706 47904839 ~ 47945574 (-) True LOC110496837
TU1780583 other upstream 2190750 47982883 ~ 47983609 (-) True LOC110496401

Expression Profile