RNA id: TU1778245


Basic Information

Item Value
RNA id TU1778245
length 1372
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G1554213
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 46223932 ~ 46286906 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gacctacagtacagacatggttagtagaccttcagtacagacatggttagtagaactacagtacagacatggttagtagacctacagacatggttagcagagctACCGTACAGACATGTTTAGTAGACcaacagtacagacatggttagtagacctatagacatggttagtagacctacagtacagacatggttagtagacctacagacatggttagcagagctaccgtacagacatggttagtagaccttcagtacagacatggttagtagacctatagacatggttagtagacctacagtacagacatggtttgtatacctacagtacagacatggttagtatacctcagtacagacatggttagtagacctacagtacagacatggttagtagacatacagtacagatATTGTTAGtttacctacagtacatacaagGTTAGTGGAccttcagtacagacatggttagtagacctacagtacagacatggttagtagacctacagtacagacatggttagtaaacctacagtacagacatggttagtagacctacagtacaggcatggttagtagacctacagtacagacatggttagtagaccttcaGTACGGACagggttagtagacctacagtacagacatggttagtagaactacagtacagacatggttagtagacctacagacatggttagcagagctACCGTACAGACATGTTTAGTAGACcaacagtacagacatggttagtagacctatagacatggttagtagacctacagtacagacatggttagtatacctacagtacagacatggttagtaggccttcagtacagacatggttagtagacctgcAGTACAGatatggttagtagacctacagtacagacatggttagtatacctacagtacatacatggttagtagacctacagacatggctagtagacctacagtacagacatggttagtatacctatagtacagacatggttagtatacttcagtacagacatggttagtagacatacagtacagacatggttagtagacctacagtacagacattgttAGTAGACCtccagtacagacatggttagtagaccttcagtacagacatggttagtagacctacagtacagacatggttagtagacctacagtacagacatggttattagacctacagtacagacatggttagtagaccttcagtacagacatggttagtagaactacagtacagacatggttagtagacctacagacatggttagcagagctACCGTACAGACATGTTTAGTAGACcaacagtacagacatggttagtagacctatagacatAGTTAGTAGAGGATGGGGAAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1778196 lncRNA downstream 5608 46218020 ~ 46218324 (-) True G1554172
TU1778045 lncRNA downstream 302178 45921443 ~ 45921754 (-) True G1554041
TU1778029 lncRNA downstream 320394 45903333 ~ 45903538 (-) True G1554026
TU1777993 lncRNA downstream 372192 45851427 ~ 45851740 (-) True G1553990
TU1777991 lncRNA downstream 373602 45849984 ~ 45850330 (-) True G1553988
TU1778285 lncRNA upstream 61 46286967 ~ 46288146 (-) False G1554248
TU1778286 lncRNA upstream 61 46286967 ~ 46288146 (-) True G1554248
TU1778291 lncRNA upstream 6480 46293386 ~ 46293594 (-) True G1554252
TU1778301 lncRNA upstream 12856 46299762 ~ 46299971 (-) True G1554262
TU1778638 lncRNA upstream 64693 46351599 ~ 46353376 (-) True G1554571
XM_021572246.2 mRNA downstream 81201 46080497 ~ 46142731 (-) False LOC110496379
XM_021572247.2 mRNA downstream 81201 46080497 ~ 46142731 (-) True LOC110496379
XM_021572245.2 mRNA downstream 149455 46061044 ~ 46074477 (-) True LOC110496378
XM_036952941.1 mRNA downstream 152723 46061044 ~ 46071209 (-) False LOC110496378
XM_021572244.2 mRNA downstream 166981 46039651 ~ 46056951 (-) True LOC110496377
XM_036952943.1 mRNA upstream 290552 46577458 ~ 46640870 (-) False LOC110496382
XM_021572251.2 mRNA upstream 385608 46672514 ~ 46756077 (-) False LOC110496383
XM_036952946.1 mRNA upstream 385608 46672514 ~ 46756077 (-) False LOC110496383
XM_021572253.2 mRNA upstream 492189 46779095 ~ 46822848 (-) True LOC110496384
XM_036952947.1 mRNA upstream 570555 46857461 ~ 47140039 (-) False trappc9
TU1778112 other downstream 115830 46101248 ~ 46108102 (-) True G1554091
TU1777652 other downstream 420884 45788099 ~ 45803048 (-) True G1553693
TU1777651 other downstream 431799 45788099 ~ 45792133 (-) False G1553693
TU1777490 other downstream 556192 45667361 ~ 45667740 (-) True G1553544
TU1776762 other downstream 1150592 45065134 ~ 45073340 (-) True G1552875
TU1779304 other upstream 625071 46911977 ~ 46912915 (-) True G1555168
TU1779770 other upstream 1256654 47543560 ~ 47546571 (-) False G1555543
TU1780537 other upstream 1617933 47904839 ~ 47945574 (-) True LOC110496837
TU1780583 other upstream 1695977 47982883 ~ 47983609 (-) True LOC110496401
TU1780876 other upstream 2069707 48356613 ~ 48356847 (-) True G1556577

Expression Profile