RNA id: TU1779660


Basic Information

Item Value
RNA id TU1779660
length 1724
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id G1555467
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 47321146 ~ 47326023 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggccaccccacatagcctggttcctctctaggtttcttcctaggttttggcctttctagggagtttttcctagccaccgtgcttctacacctgcattgcttgctgtttggggttttaggctgggtttctgtacagcactttgagatatcagctgatgtacgaagggctatataaatacatttgatttgatttataggaTGACGTATATAacagcatgtacgtgataggtgACTTATAGGATGACGTATATTacagcatgtacgtgataggtgACTTATAGGATGACGTATATTacagcatgtacgtgataggtgACTTATAGGATGACGTATATAACAGCATGTACATGATAGGTGACTTATAGGATGACGTATATAacagcatgtacgtgataggtgACTTATAGGATGACGTATATTacagcatgtacgtgataggtgACTTATAGGATGACGTATATAacagcatgtacgtgataggtgACTTATAGGATGACGGTCATAATGCTTCACGACAGTGTCAAAAAGCGGATTTTCTACAAGTTAATTAAAATACAACAAAAACATGACTGTAAAAAATTCATTATAACAGAGGTTTTAAGAAACAATCTTTTAAAAAAACGAAAGGACACTACTTGGCCGGGAAAAAACTATTTTGAATAAATGTGAGTTTTGATtctataaccagccataaaataatgcaatatatgtcacaataGGTGTAAACATGGGTCATGACAGTGTAATGACCATATTGTGACAGGTTATGTCAAGCGTTTCCACATAGTTAAGACCATGTCATAACAtgttatgacactgggtgtcaagtaaaatgTGACCTAGTTAGGTACAGGAGCATGATATTCTCTTGGCATCAAAAAGCACATCTACATCTTGTATTTCAAAGTCACCAATATGTCAATAACATTCATTGTCTTTGAGGTGTTCCCTCTTCATCCGTTCCCAGTGGGTTTTTTGGCCTCCAGTACATTCCAGGTTAGTTCTTGGTGTCTACATGTTGCACCATAAAACCGTTGACCAATCAAGTGTGCGGTTATCTATCTTCCTCGGGTCAGTTTACATTACCCTGCAAGTCCCTGGATGTGAGTACACTACCTTGAAACTGATTCTGGTGTTAGTGTTGAAACGATAATGCAGAAAGAGATCCGGCAGCAGTGGAGAGTCGAGTTTCATATCAAAAGAGCTAGTTGTTATTCAAGGGTAAAGGAACACACACCACCACGAATGTAATTGGAGGGCAATAAGAGGAACGGACAACAAAACAGGGGAAGCTGCTGGAAGGGTTTGGGAAGTAAATCTACAGTGGCTTTTCTATGAGACAGACCAACCCCCAAAACAAGGGCGCAATACGCCAGAATCAAAGATAAATTCACGACCCTGGTTACATTAGAATCCTTCAATATACAGATGACACAATTCATAGTATCGCCTTCAAAGTAAAGTCGTGGTCTTCGTGACGGAGTTTGCATACGCATAATACTCCTCCCACTTCATTTAACATAGTGCAATTCTCAGGCTCCTTAAAGTTCTCAACGCAGAATTAAAGAGACCTTACAATATGTGTATCTGTATGGCTCCCAACCTCTTCAGCTGGAGACTGGTGAGTAGCTCCATGGTATCAGCAGTGTTGAAGATGGATCATCATGTTCTGACTGAAGTCCCGGGCAGGGGCATGCCTAACACAGACATCTGACGTTCAGAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1779647 lncRNA downstream 16848 47303843 ~ 47304298 (-) True G1555458
TU1779645 lncRNA downstream 19618 47301182 ~ 47301528 (-) True G1555456
TU1779643 lncRNA downstream 21636 47299281 ~ 47299510 (-) True G1555454
TU1779478 lncRNA downstream 100190 47220732 ~ 47220956 (-) True G1555331
TU1779455 lncRNA downstream 125640 47190003 ~ 47195506 (-) True G1555314
TU1779667 lncRNA upstream 8377 47332588 ~ 47339837 (-) False G1555469
TU1779664 lncRNA upstream 8608 47332819 ~ 47333224 (-) False G1555469
TU1779674 lncRNA upstream 14360 47338571 ~ 47376258 (-) True G1555473
TU1779668 lncRNA upstream 15285 47339496 ~ 47410478 (-) True G1555469
TU1779746 lncRNA upstream 157134 47481345 ~ 47481802 (-) True G1555531
XM_036952961.1 mRNA downstream 28938 47258150 ~ 47292208 (-) True LOC118941176
XM_036952962.1 mRNA downstream 60711 47258150 ~ 47260435 (-) False LOC118941176
XM_036952963.1 mRNA downstream 60728 47258150 ~ 47260418 (-) False LOC118941176
XM_036952956.1 mRNA downstream 70179 47248660 ~ 47250967 (-) True LOC118941174
XM_036952957.1 mRNA downstream 70222 47248660 ~ 47250924 (-) False LOC118941174
XM_021572268.2 mRNA upstream 2738 47326949 ~ 47328359 (-) True LOC110496393
XM_021572276.2 mRNA upstream 312310 47636521 ~ 47647411 (-) True LOC110496398
LOC110496399 mRNA upstream 482868 47807079 ~ 47808361 (-) True LOC110496399
XM_036951068.1 mRNA upstream 566369 47890580 ~ 47927015 (-) False LOC110496837
XM_021572278.2 mRNA upstream 658515 47982726 ~ 47986560 (-) False LOC110496401
TU1779304 other downstream 408231 46911977 ~ 46912915 (-) True G1555168
TU1778112 other downstream 1213044 46101248 ~ 46108102 (-) True G1554091
TU1777652 other downstream 1518098 45788099 ~ 45803048 (-) True G1553693
TU1777651 other downstream 1529013 45788099 ~ 45792133 (-) False G1553693
TU1777490 other downstream 1653406 45667361 ~ 45667740 (-) True G1553544
TU1779770 other upstream 219349 47543560 ~ 47546571 (-) False G1555543
TU1780537 other upstream 580628 47904839 ~ 47945574 (-) True LOC110496837
TU1780583 other upstream 658672 47982883 ~ 47983609 (-) True LOC110496401
TU1780876 other upstream 1032402 48356613 ~ 48356847 (-) True G1556577
TU1783089 other upstream 2643685 49967896 ~ 49968608 (-) True G1558535

Expression Profile