RNA id: TU1779770


Basic Information

Item Value
RNA id TU1779770
length 2098
RNA type TUCP
GC content 0.43
exon number 4
gene id G1555543
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 47543208 ~ 47546614 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTTTAATACAGTACATTTCAGATGGACTTAATATATATTCCAAAATGACAAATATTTAAAAGACAAATAAAACAATGTAAAAGTATAAGAAACCAGTAAGAGATGAAGACTGGAGGGCAGCAGGTACCCGAGCAGTTAACATCTGTTTAGAATACACTACAACAAACCACTGAACCCTATtggctcctgtaagtcactcaggaaaaacaacatctgctaaataactcaaatgtaaaaatgtatgtagctTCTGTCACATGACCATTACATTATACTATGACACACAACTACACTAACAGACTCACGTCAGAGACAAATACAGACAACATTGAGGAAAGTGTCCACACTCCGTAAACAAAGACAACTCCATGTGTGTCAATAAAACATTCCGACTCTTTCTGCATGTCAGTGTCCAGATTGAGAGAAATGAAAACAGCACTTGGGTACAGACATGCGTTACAGGTACATTCTCAGCAGTAACCACTTCCATTACCAACATGTGTTACAGGTACATTCTCAGCAGTAACCACTTCCATTACCGACATGTGTTTGTTACAGGTACATTCTCAGCAGTAACCACTTCCATTACCAACACGTGTTACAGGTACATTCTCAGCAGTAACCACTTCCATTACCAACATGTGTTTGTTACAGGTACATTCTCAGCAGTAACCACTTCCATTACCGACATGTGTTACAGGTACATTCTCAGCAGTAACCACTTCCATTACCGACATGTGTTTGTTACAGGTACATTCTCAGCAGTAATCACTTCCATTACCAACATGTGTTACAGGTACATTCTCAGCAGTAACCACTTCCATTACCAACACGTGTTACAGGTACATTCTCAGCAGTAACCACTTCCATTACCAACACGTGTTACAGGTACATTCTCAGCAGTAACCACTTCCATTACCGACATGTGTTTGTTACAGGTACATTCTCAGCAGTAACCACTTCCAGTACCGACATGTGTTTGTTACAGGTACATTCTCAGCAGTAACCACTTCCATTACCAACACGTGTTACAGGTACATTCTCAGCAGTAACCACTTCCATTACCGACATGTGTTTGTTACAGGTACATTCTCAGCAGTAACCACTTCCATTACCAACATGTGTTACAGGTACATTCTCAGCAGTAAGCACTTCCATTACCAACATGTGTTTTGCTAAAAAGTATAAATACTGAACATAGTCTATGGTCTAACTCCTTCtgtgcaaaaatatatataataatcaaACTCCCAGCAGACAAGACTGAGCCCTTGTATCCTTAAAGTAAACCAAGGTTAGGTCAGCTTGTCTGTATATTGCTTGAGTGTAAACAGCAAAAAGGCCTGTTGGTTTGGAAGAGGCAGACAGTCTGACGGGTTGGAGAGAGCCACTACCATAAGACTGAACTAAATAGCCCAGTGGCAGTCACACTTTGGAAACAAACATGTTCTAATAAACTCCCTAGTATTTACGTTTCTCCTGAACCTCAAAACAGCGGCTCAACCTCTAACCAAACTAGGAAGTGGATGATTCAGATATATAGGCTGGGTTCCCCTTTCACTGAAAGACATAACACCGAGTTGCCTGGTTATAACGTTAAGGCACAGAATGACGTGAGTAACTAACGGTTGAGCTACACCCATGTCAAACATGGCCTAGCAGGCGGTTTCACTTCCTTGTTCCAGAGATGGTCTTTTCAGCGGTAAACAACCAACAGTCTGGTGTAGACTGGGCTACCAGGAACAGGAAACACCACCATATGTAATGTCCTGAATACCAGATCCTGAacaacagtaatacagtacactgGTCTGTACTGGATCCTGAacaacagtaatacagtacactgGTCTGAGACTGTCATGAGAGGGTGACCCCATACACAACAGCCAAACAGTGTtagaacaggcaactaaactgGGGCCTGCCAGTCAGGCTGAGGGGGGTTGCaggtagaggggaggagggaaccTGCAAGGCACGGGAGGGGGGCAGCTGGGATGGCGTGGGCCCTACTACCACTTTAATCTCCTTAGCAGCCGGCATGGGCAGCACCATCTCCATGGAAACTGTCTGCGATGACTGCTCCACTGGCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1779778 lncRNA downstream 379 47542123 ~ 47543181 (-) True G1555544
TU1779790 lncRNA downstream 14914 47528443 ~ 47528646 (-) True G1555556
TU1779766 lncRNA downstream 37678 47505302 ~ 47505882 (-) True G1555542
TU1779748 lncRNA downstream 53438 47488289 ~ 47490122 (-) True G1555532
TU1779746 lncRNA downstream 61758 47481345 ~ 47481802 (-) True G1555531
TU1779800 lncRNA upstream 636 47547207 ~ 47547557 (-) True G1555566
TU1779801 lncRNA upstream 1323 47547894 ~ 47548109 (-) True G1555567
TU1779809 lncRNA upstream 14036 47560607 ~ 47560823 (-) True G1555575
TU1779815 lncRNA upstream 16023 47562594 ~ 47562850 (-) True G1555581
TU1779819 lncRNA upstream 17424 47563995 ~ 47564259 (-) True G1555585
XM_021572268.2 mRNA downstream 215201 47326949 ~ 47328359 (-) True LOC110496393
XM_036952961.1 mRNA downstream 251352 47258150 ~ 47292208 (-) True LOC118941176
XM_036952962.1 mRNA downstream 283125 47258150 ~ 47260435 (-) False LOC118941176
XM_036952963.1 mRNA downstream 283142 47258150 ~ 47260418 (-) False LOC118941176
XM_036952956.1 mRNA downstream 292593 47248660 ~ 47250967 (-) True LOC118941174
XM_021572276.2 mRNA upstream 89950 47636521 ~ 47647411 (-) True LOC110496398
LOC110496399 mRNA upstream 260508 47807079 ~ 47808361 (-) True LOC110496399
XM_036951068.1 mRNA upstream 344009 47890580 ~ 47927015 (-) False LOC110496837
XM_021572278.2 mRNA upstream 436155 47982726 ~ 47986560 (-) False LOC110496401
XM_021572279.2 mRNA upstream 455315 48001886 ~ 48022110 (-) True LOC110496402
TU1779304 other downstream 630645 46911977 ~ 46912915 (-) True G1555168
TU1778112 other downstream 1435458 46101248 ~ 46108102 (-) True G1554091
TU1777652 other downstream 1740512 45788099 ~ 45803048 (-) True G1553693
TU1777651 other downstream 1751427 45788099 ~ 45792133 (-) False G1553693
TU1777490 other downstream 1875820 45667361 ~ 45667740 (-) True G1553544
TU1780537 other upstream 358268 47904839 ~ 47945574 (-) True LOC110496837
TU1780583 other upstream 436312 47982883 ~ 47983609 (-) True LOC110496401
TU1780876 other upstream 810042 48356613 ~ 48356847 (-) True G1556577
TU1783089 other upstream 2421325 49967896 ~ 49968608 (-) True G1558535
TU1783125 other upstream 2476520 50023091 ~ 50034141 (-) True LOC110496434

Expression Profile