RNA id: TU1779801


Basic Information

Item Value
RNA id TU1779801
length 216
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G1555567
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 47547894 ~ 47548109 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggctgactacctgttatgtgagtgcagaaaggagccaaggtaaggtgctagctggcattaaacttatcttatagaaaaatcaatcttaacataatcactagttaattacacatggttgatgatattactagtttatcaagcttgtcctgcgttgcatataatcggtgcggtgcctgttaatttatcattgaatcacagcctacttcgccaaacggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1779800 lncRNA downstream 337 47547207 ~ 47547557 (-) True G1555566
TU1779769 lncRNA downstream 1280 47543560 ~ 47546614 (-) False G1555543
TU1779774 lncRNA downstream 1323 47543208 ~ 47546571 (-) False G1555543
TU1779768 lncRNA downstream 1323 47543560 ~ 47546571 (-) False G1555543
TU1779771 lncRNA downstream 1323 47543560 ~ 47546571 (-) False G1555543
TU1779809 lncRNA upstream 12498 47560607 ~ 47560823 (-) True G1555575
TU1779815 lncRNA upstream 14485 47562594 ~ 47562850 (-) True G1555581
TU1779819 lncRNA upstream 15886 47563995 ~ 47564259 (-) True G1555585
TU1779916 lncRNA upstream 78711 47626820 ~ 47627048 (-) True G1555682
TU1779938 lncRNA upstream 93296 47641405 ~ 47642527 (-) True G1555699
XM_021572268.2 mRNA downstream 219535 47326949 ~ 47328359 (-) True LOC110496393
XM_036952961.1 mRNA downstream 255686 47258150 ~ 47292208 (-) True LOC118941176
XM_036952962.1 mRNA downstream 287459 47258150 ~ 47260435 (-) False LOC118941176
XM_036952963.1 mRNA downstream 287476 47258150 ~ 47260418 (-) False LOC118941176
XM_036952956.1 mRNA downstream 296927 47248660 ~ 47250967 (-) True LOC118941174
XM_021572276.2 mRNA upstream 88412 47636521 ~ 47647411 (-) True LOC110496398
LOC110496399 mRNA upstream 258970 47807079 ~ 47808361 (-) True LOC110496399
XM_036951068.1 mRNA upstream 342471 47890580 ~ 47927015 (-) False LOC110496837
XM_021572278.2 mRNA upstream 434617 47982726 ~ 47986560 (-) False LOC110496401
XM_021572279.2 mRNA upstream 453777 48001886 ~ 48022110 (-) True LOC110496402
TU1779770 other downstream 1323 47543560 ~ 47546571 (-) False G1555543
TU1779304 other downstream 634979 46911977 ~ 46912915 (-) True G1555168
TU1778112 other downstream 1439792 46101248 ~ 46108102 (-) True G1554091
TU1777652 other downstream 1744846 45788099 ~ 45803048 (-) True G1553693
TU1777651 other downstream 1755761 45788099 ~ 45792133 (-) False G1553693
TU1780537 other upstream 356730 47904839 ~ 47945574 (-) True LOC110496837
TU1780583 other upstream 434774 47982883 ~ 47983609 (-) True LOC110496401
TU1780876 other upstream 808504 48356613 ~ 48356847 (-) True G1556577
TU1783089 other upstream 2419787 49967896 ~ 49968608 (-) True G1558535
TU1783125 other upstream 2474982 50023091 ~ 50034141 (-) True LOC110496434

Expression Profile