RNA id: TCONS_00005954


Basic Information

Item Value
RNA id TCONS_00005954
length 1480
lncRNA type inter_gene
GC content 0.50
exon number 4
gene id XLOC_002472
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 32901 ~ 45486 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACACATTAAAGcaaaatataatatgatttacaaacttcatttgttttaaagcaggggtctcagaCTCCATTCCTGGAGGCAGTAGCTCTCGACACTTTAGCTCTAACCATCTCCAGCTCACACTTGCTTAATAGTGtccagtagtcttgaacaccttgattatttgatcagctgtgtttgatttaaggttggagcaaaactgtgaagagctgcggccctccaggagtccAGTTTGGAACCTGTGCTTCAAAGCTTTTCCCCAACACACAGGACAGATCACGCCTGCagttctccatgatggacgtccagcactctccagcctccggcgcaggactttcagcagtgaagattaaaccacactgaactgaacttcagctctgaacacTGGACTTCACTAGAACTTGTATCttaagtggctttgacacaatctatattgtagaagtgttacacacacacacacacacacacacacacacacatatatatgtatgaacTGAATCTGACATGACGAGCGCGCCTCAGTCACTGAACACACGGTGGCGCTACTGCAGCAGAAATCACAGACACGCTAAACAGACGCTAAACATGCATTCAGGAGTTAGTGTTGGGTAATTAACTGTATTAATATCCACACTAAAGTCTGACTATAGCTGGACTAGCTGTAGCGTTAACTGACAACACAATGAGAAGATCCTCAGTTCAGTATGGCGGTAATACAGCAGTACAGCACTGTACAGTCCATATCTGCTGTGAAGCTGACACGAATCCCGGTAAATGTTGGTGTTTTACAGCTTTATTAATCAACTCGACCCTTCATGTGTGTCAATCATCATCAGTGCTCACTGTTGACACAATACCGCCGCTGTTGGAGCTCTGCTGGCTGTTTATTGACAGTGTGGGTGAGCTGATAGTGTTCGCTGTAAACACTGTCCGGTTACTCAGATGTTCCTGCGGGGATCAGGACTGAAGCTCCTCCCAGACAAACTTCCTCAAACTCGGGcagacctcacacacacactcacacacacacacacacacggccgaATGACGAGCAGATAAGAGTTAAACAGCGAGCTTTGCGGATTCTCCCCCCGCTGGATGAGGCTCGGGGGTCGGCAGGATGTCCTGGACCGAGGCCTTCAGGAGCATTTCCAGGTTATTCTCCCGGAGTAGACCAGCGGACAGCGCGGACTCGGAGAGACAGGCTGAGGCTGATGGATCCACATGTACCTGTAGTGTTCCTGAAGATGGTGCAGATCAAACACCTGGAAAAGCAGCAGCACAGTGTTCTGGCAGCACCGGAGGGCATGAGGGTGTCTCCGCAGCCCCCCGCGCCCCCACAGCGCCCCCTGCGCACACACTCCCGCTCCAGACCAGCCGGACagcgcacacacatactctcaGCAGCACTGTGGAGCCGCCCGGGGGCCGgtcacagcgcacacacacacaGGGCTGGACAGTGAAACTGAAATCCTGC

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0016071 mRNA metabolic process biological_process
GO:1901532 regulation of hematopoietic progenitor cell differentiation biological_process
GO:0050919 negative chemotaxis biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0000380 alternative mRNA splicing, via spliceosome biological_process
GO:0000381 regulation of alternative mRNA splicing, via spliceosome biological_process
GO:0006396 RNA processing biological_process
GO:0006397 mRNA processing biological_process
GO:1990138 neuron projection extension biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0050684 regulation of mRNA processing biological_process
GO:0048588 developmental cell growth biological_process
GO:0048863 stem cell differentiation biological_process
GO:2000026 regulation of multicellular organismal development biological_process
GO:0048024 regulation of mRNA splicing, via spliceosome biological_process
GO:0050793 regulation of developmental process biological_process
GO:1903311 regulation of mRNA metabolic process biological_process
GO:0043484 regulation of RNA splicing biological_process
GO:0048675 axon extension biological_process
GO:0008380 RNA splicing biological_process
GO:0071010 prespliceosome cellular_component
GO:0071013 catalytic step 2 spliceosome cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0016604 nuclear body cellular_component
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005684 U2-type spliceosomal complex cellular_component
GO:0071004 U2-type prespliceosome cellular_component
GO:0048495 Roundabout binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005953 lncRNA downstream 7277 30306 ~ 30830 (-) True XLOC_002471
TCONS_00005737 lncRNA upstream 6008 48851 ~ 51974 (-) True XLOC_002473
TCONS_00004643 lncRNA upstream 42677 85520 ~ 86348 (-) False XLOC_002476
TCONS_00005955 lncRNA upstream 124566 167409 ~ 169656 (-) False XLOC_002479
TCONS_00005956 lncRNA upstream 124566 167409 ~ 170420 (-) False XLOC_002479
TCONS_00005957 lncRNA upstream 124566 167409 ~ 175562 (-) True XLOC_002479
TCONS_00004634 mRNA upstream 10744 53587 ~ 57270 (-) True XLOC_002474
TCONS_00004635 mRNA upstream 19526 62369 ~ 76352 (-) False XLOC_002475
TCONS_00004636 mRNA upstream 20363 63206 ~ 74408 (-) False XLOC_002475
TCONS_00004637 mRNA upstream 29207 72050 ~ 74424 (-) False XLOC_002475
TCONS_00004638 mRNA upstream 29207 72050 ~ 76367 (-) False XLOC_002475
TCONS_00004639 other upstream 29590 72433 ~ 74390 (-) False XLOC_002475
TCONS_00004640 other upstream 30607 73450 ~ 76191 (-) True XLOC_002475
TCONS_00004658 other upstream 297069 339912 ~ 340027 (-) True XLOC_002487
TCONS_00004703 other upstream 2823877 2866720 ~ 2875735 (-) False XLOC_002517
TCONS_00004704 other upstream 2825635 2868478 ~ 2875735 (-) True XLOC_002517

Expression Profile

//