RNA id: TU1780851


Basic Information

Item Value
RNA id TU1780851
length 250
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G1556552
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 48340737 ~ 48340986 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tatttaagtacgccagttgagaacaagttctcatttacaactgcgacctggccaagataaagcaacgcattgaaacaaaaacaacaacacagagttacacataaacaaacgtacagtcaataacacaaaagaaaagaaaaatagaaaaatctatgtacggTGTGTGCACATgaggaagagtagggaggtaggcaataaatagaccctagaagtgaaaataattacaatttagcattaatactagagtgat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1780844 lncRNA downstream 2686 48337836 ~ 48338051 (-) True G1556545
TU1780640 lncRNA downstream 200095 48132364 ~ 48140642 (-) False G1556356
TU1780863 lncRNA upstream 5923 48346909 ~ 48347205 (-) True G1556564
TU1780875 lncRNA upstream 14701 48355687 ~ 48356091 (-) True G1556576
TU1780886 lncRNA upstream 22890 48363876 ~ 48364078 (-) True G1556587
TU1780898 lncRNA upstream 30671 48371657 ~ 48372010 (-) True G1556599
TU1780910 lncRNA upstream 38293 48379279 ~ 48379503 (-) True G1556611
XM_036952968.1 mRNA downstream 278575 48057022 ~ 48062162 (-) True LOC118941177
LOC110496403 mRNA downstream 291017 48037858 ~ 48049720 (-) True LOC110496403
XM_021572279.2 mRNA downstream 318627 48001886 ~ 48022110 (-) True LOC110496402
XM_021572278.2 mRNA downstream 354177 47982726 ~ 47986560 (-) False LOC110496401
XM_036951068.1 mRNA downstream 413722 47890580 ~ 47927015 (-) False LOC110496837
XM_036952975.1 mRNA upstream 50929 48391915 ~ 48661346 (-) False LOC110496838
XM_036952977.1 mRNA upstream 50929 48391915 ~ 48661346 (-) False LOC110496838
XM_036952978.1 mRNA upstream 50929 48391915 ~ 48661346 (-) False LOC110496838
XM_036952971.1 mRNA upstream 50929 48391915 ~ 48661347 (-) False LOC110496838
XM_036952972.1 mRNA upstream 50929 48391915 ~ 48661347 (-) False LOC110496838
TU1780583 other downstream 357128 47982883 ~ 47983609 (-) True LOC110496401
TU1780537 other downstream 395163 47904839 ~ 47945574 (-) True LOC110496837
TU1779770 other downstream 794166 47543560 ~ 47546571 (-) False G1555543
TU1779304 other downstream 1427822 46911977 ~ 46912915 (-) True G1555168
TU1778112 other downstream 2232635 46101248 ~ 46108102 (-) True G1554091
TU1780876 other upstream 15627 48356613 ~ 48356847 (-) True G1556577
TU1783089 other upstream 1626910 49967896 ~ 49968608 (-) True G1558535
TU1783125 other upstream 1682105 50023091 ~ 50034141 (-) True LOC110496434
TU1783393 other upstream 2015283 50356269 ~ 50359030 (-) True LOC110496438
TU1783548 other upstream 2096011 50436997 ~ 50437459 (-) True G1558916

Expression Profile