RNA id: TU1782448


Basic Information

Item Value
RNA id TU1782448
length 2526
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G1557993
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 49262657 ~ 49319527 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAATTGATTACAGCCCTTAGTCTCTTGGTGTTATTTCTAAAAGGAAATTACAATCTCATGTAATATTACAATCATACTGTATTTGAATAGAATCTACCTATTTACAGCACATCATAACTATATCTGTAGTCTATGTACAGGTTTGAAAAGTACAAAAGCATCAGTCTGTCTATTCAAGTTAAGTGGTCCTCTGTTGAAACATTTGAGACAGTAGTATAAGAGCTGCTGGTGGCGGAGTCCAACGGaatgacaaaaaaacatttgtaaaTTTCTCTCCCTTCCCACAAACACTGGCCCCACAGAAGCACGACAATTGTGCATAGCCTACATGCATTTATGAATTATGTTATTTTTTGTATAGATTATTTATTTCCAAATGGGCTTATACACGATATCAATGTGtgcaaaaaacattttttcatgAAACAAATTAAATACAGTTAACAAATATGCATAATTAGCACTCAAAGTAGTTTATCTGTAAAATCAAATTGCGCAGTTtaattggatattttttttacccaaacTGTCACCTAAAAATTTGCACCCCCCAAAATGACAATAACAATTTTATCCTTTTGACATGGAAATAACAACTAAAATGTCTTcaagtggagatgtgttgagtcGATAGGTTTTATTGGTTACCAACGTTAACCTTTGTCAGTTCGAATAACCTCAATGCATTTGATTTCCTGTCCATTTGCACTCATATCATACAAATGCGGTCTATTACCATACACTATAATAATTAAGTGACTGGACCGTGTTTGTCAATGATGGACTGCAGTTAGTTCATAACCTTACAAGAACATTATAATTTACAAGAACATAATTTACAGCAAACCTCCTATATGCGTGTAACACACACAGCACCATCAGCTGAAACCGTAAGCATAAAATAAGAGATTCCTCTATACAAATAAACATTCAATCAAAGCCCTTCCTCAGGTGACTATATAGGGCCACACCGAGACAGAGGTAACGTAGCAGCGGTTACCCTGATTACATCTATGCTTTTACAACATCCCCCTTAATGTCATTCAACACCTATAGTTTAGAGGAGACAAACCTCCTCTgtagtcattcattcattcattgtcAGTTTACTTTCAACTAGATGGTTTGGAGTTTAATTAACGAGCCCTAACCCCCTTTAGAATCACCCTGTCATTTCAGGCAATAAGCACAACATTCTTCTAGATTAGTCTGCCTAcaattataaatatatatgtttattttaaATACACCCAAGGTGTAGAACAaagctctctaaccctgttcttggaaagctaccttcctgtaggttcactccaaccccagttgtaccTAACCTGATTCaccttatcaaccagctaattattagaatcaagtGTGCTAGAttgggttggagcaaaaacctacagggtggtagctctccaggaagagggttggagcaaaaacctacaggatggtagctctccaggaagagggttggagcaaaaacctacagggtggtagctcttcaggaagaggttggagaaaaaacctacaggatggtagctctccatgaacaaggttggagcaaaaacctacaagGTGGTAGCTCtctgggaacagggttggagcaaaaacctacaggatcGTAGCTCTCCATGAACaaggttggagcaaaaacctacaagGTGGTAGCTCtctgggaacagggttggagagccatggTGTAAGACCTAAACGAAAAGTGTAAataatcaaatcacatttcatATTGCACCAACGATGCAAAAATACACATCTACACAATATTTATAAAAGGTTATTCTCTAAGGGTTGTACAGTTGCAAACTTCCTACACAACACGGACATACAGAAACAAGACAAAGAAACATAATATCTTCCGCTTGTGTCTGAACGTGTGTATTCATGGTTATTACAACAGAAGCCTTTCAGCCTTACAGTACGATAACGTTGAAGTCTTAAGtatttcccctccctcccctttgaTCTTGACACATTTGCTGACTACTTCAACTTGTTTGTGAAGGGAAAAGATCACGTGAAGTGAGGGGCGTGATGAGGGTTCTCTTGGAGGTCAGGGTTCATAGTTCATTAGTGTAGATGGTCGAGGTGTGTCAAGGTGGGTGGAGAAATGGGCTTTGTGGTCCACAACCACAGGCCTCAGACCCAATGTCcatggtcatattcattagggcacaccataGCAAAAGGTTTTGCAACGGGGGAAAAATTTACAAGCATTTATTATTGGGCAAGTTCATGTGGTACCTCCCCATCTCAGTAAAtgttccatttggtgcctaatgaatactcCCCAGGTTCAGAACTTGGTTCTGGTCTAGTGATGGATCTTGAAGGCCAGCAGCTGCTCAGAGTGCATGTTATTAAGGGAGCGCAGTTCGGGCAGTCTGAGGAGCAGCTTGGTGAATATGGCTGACTCGTTGGTGTGGTTCTTAGTGATGAGGCCCTTCAGGTGCCGGATCAGAGTTTCCTGAAGCGCCTCCACAGAGTTCACGTTCTCAATCCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1782352 lncRNA downstream 178306 49134674 ~ 49137971 (-) True LOC110496415
TU1782324 lncRNA downstream 230256 49084672 ~ 49086021 (-) True G1557879
TU1781716 lncRNA downstream 275825 49040180 ~ 49040452 (-) True G1557376
TU1781700 lncRNA downstream 286261 49029769 ~ 49030016 (-) True G1557360
TU1781529 lncRNA downstream 581489 48734557 ~ 48734788 (-) True G1557202
TU1782543 lncRNA upstream 157825 49477352 ~ 49477569 (-) True G1558076
TU1782589 lncRNA upstream 224786 49544313 ~ 49544584 (-) True G1558118
TU1782606 lncRNA upstream 261447 49580974 ~ 49581482 (-) True G1558134
TU1782611 lncRNA upstream 266816 49586343 ~ 49586880 (-) True G1558139
TU1782624 lncRNA upstream 291159 49610686 ~ 49611260 (-) True G1558152
XM_021572313.2 mRNA downstream 18934 49295572 ~ 49297343 (-) False LOC110496424
XM_036952995.1 mRNA downstream 18934 49295572 ~ 49297343 (-) True LOC110496424
XM_021572308.2 mRNA downstream 106794 49203985 ~ 49209483 (-) True LOC110496421
XM_021572309.2 mRNA downstream 112389 49201226 ~ 49203888 (-) False LOC110496422
XM_036952998.1 mRNA upstream 13154 49332681 ~ 49349929 (-) False LOC100135978
XM_036952999.1 mRNA upstream 13154 49332681 ~ 49349929 (-) False LOC100135978
XM_036953000.1 mRNA upstream 13154 49332681 ~ 49349929 (-) False LOC100135978
XM_036953001.1 mRNA upstream 13156 49332683 ~ 49473129 (-) True LOC100135978
XM_036951069.1 mRNA upstream 61329 49380856 ~ 49397467 (-) True LOC118940996
TU1780876 other downstream 959430 48356613 ~ 48356847 (-) True G1556577
TU1780583 other downstream 1332668 47982883 ~ 47983609 (-) True LOC110496401
TU1780537 other downstream 1370703 47904839 ~ 47945574 (-) True LOC110496837
TU1779770 other downstream 1769706 47543560 ~ 47546571 (-) False G1555543
TU1779304 other downstream 2403362 46911977 ~ 46912915 (-) True G1555168
TU1783089 other upstream 648369 49967896 ~ 49968608 (-) True G1558535
TU1783125 other upstream 703564 50023091 ~ 50034141 (-) True LOC110496434
TU1783393 other upstream 1036742 50356269 ~ 50359030 (-) True LOC110496438
TU1783548 other upstream 1117470 50436997 ~ 50437459 (-) True G1558916
TU1783852 other upstream 1303564 50623091 ~ 50623983 (-) True G1559205

Expression Profile