RNA id: TU1782677


Basic Information

Item Value
RNA id TU1782677
length 1009
lncRNA type intronic
GC content 0.44
exon number 7
gene id G1558196
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 49690614 ~ 49704345 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaaagagaagggggagagagagaaacagtaaaagagaaggggggagagagagaaacagtaaaagagaaggggagagagagagaaacagtaaaagagaagggggagagagagaaacagtaaaagagaagggggagagagagagaaacagtaaaagagaagtggagagagagaaacagtaaaagagaaggggagagagagaaacagtaaaagagaaggggagagagagaaacagtaaaagagaaggggagagagagagagaaacagtaaaagagaagggggagagagagaaacagtaaaagagaaggggggagagagagaaacagtaaaagagaaggggagagagagagaaacagtaaaagagaaggggagagagagaaacaataaaagagaagtggagagagagaaacagtaaaagagaaggggggagagagaaacagtaaaagagaaggggggagagagagagaaacagtaaaagagaaggggggagagagagaaacagtaaaagagaaggggagagagagagaaacagtaaaaaagaaggggggagagagagagaaacagtaaaagagaaggggagagagagagaaacagtaaaagagaagtggagagagagagaaacagtaaaagagaaggggagagagagaaacagtaaaagagaaggggagagagagagaaacagtaaaagagaaggggagagagagagaaacagtaaaagagaaggggagagagagaaacagtaaaagagaaggggagagagagagaaacagtaaaagagaaggggggagagagagagaaacagtaaaagagaaggggagagagagagaaacagtaaaagagaaggggagagagagagacacagtaaaagagaaggggagagagggaaacagtaaaaggggggagagagaaacagtaaaagagaagtggagagagagagagaaacagtaaaaggggggagagagagagaaacagtaaaagagaagtggagagagagagagaaacagtaaaaggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1782628 lncRNA downstream 70026 49620389 ~ 49620588 (-) True G1558156
TU1782624 lncRNA downstream 79354 49610686 ~ 49611260 (-) True G1558152
TU1782611 lncRNA downstream 103734 49586343 ~ 49586880 (-) True G1558139
TU1782606 lncRNA downstream 109132 49580974 ~ 49581482 (-) True G1558134
TU1782589 lncRNA downstream 146030 49544313 ~ 49544584 (-) True G1558118
TU1782706 lncRNA upstream 42497 49746279 ~ 49753092 (-) False G1558215
TU1782709 lncRNA upstream 42497 49746279 ~ 49753092 (-) True G1558215
TU1782749 lncRNA upstream 143381 49847163 ~ 49847426 (-) True G1558254
TU1782996 lncRNA upstream 172726 49876508 ~ 49884470 (-) True G1558459
TU1783002 lncRNA upstream 217415 49921197 ~ 49922691 (-) False G1558460
XM_036953001.1 mRNA downstream 217485 49332683 ~ 49473129 (-) True LOC100135978
XM_036951069.1 mRNA downstream 293147 49380856 ~ 49397467 (-) True LOC118940996
XM_036952998.1 mRNA downstream 340685 49332681 ~ 49349929 (-) False LOC100135978
XM_036952999.1 mRNA downstream 340685 49332681 ~ 49349929 (-) False LOC100135978
XM_036953000.1 mRNA downstream 340685 49332681 ~ 49349929 (-) False LOC100135978
XM_036953006.1 mRNA upstream 63358 49767140 ~ 49784144 (-) False LOC110496426
XM_036953002.1 mRNA upstream 63358 49767140 ~ 49796975 (-) False LOC110496426
XM_036953003.1 mRNA upstream 63358 49767140 ~ 49796975 (-) False LOC110496426
XM_036953004.1 mRNA upstream 63358 49767140 ~ 49796975 (-) False LOC110496426
XM_036953005.1 mRNA upstream 63358 49767140 ~ 49796975 (-) True LOC110496426
TU1780876 other downstream 1333767 48356613 ~ 48356847 (-) True G1556577
TU1780583 other downstream 1707005 47982883 ~ 47983609 (-) True LOC110496401
TU1780537 other downstream 1745040 47904839 ~ 47945574 (-) True LOC110496837
TU1779770 other downstream 2144043 47543560 ~ 47546571 (-) False G1555543
TU1779304 other downstream 2777699 46911977 ~ 46912915 (-) True G1555168
TU1783089 other upstream 264114 49967896 ~ 49968608 (-) True G1558535
TU1783125 other upstream 319309 50023091 ~ 50034141 (-) True LOC110496434
TU1783393 other upstream 652487 50356269 ~ 50359030 (-) True LOC110496438
TU1783548 other upstream 733215 50436997 ~ 50437459 (-) True G1558916
TU1783852 other upstream 919309 50623091 ~ 50623983 (-) True G1559205

Expression Profile