RNA id: TU1783008


Basic Information

Item Value
RNA id TU1783008
length 1241
lncRNA type antisense_over
GC content 0.41
exon number 3
gene id G1558460
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 49921197 ~ 49922691 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATGAACAGAGTTAAATGTAAGGGAAGGGAACCCCATTGTTGTTTATTACAGTCAATACAGACCTGTTTACAGTCATTGGTCATTGTAAGTAAACTACATCAGGGTTATGTTAACGATTGAGTTAACAACCAAACTTTCCTCCCCCACCGTCTTCTAAAACAGGGTTTCCCAGCCCTGGTCAAGGGGGCCTACTGTGTAGCAGCTGGAGTGAAATTCAGTATGCACAGTAAACCTCAAAGACCAGAATGGAGAAATGCCTACAAACACAAAATGAAAAATGTAACGATTACTGTAGCAGGGccaatataatagagagagagggaaaaaaggaCAAAATAACCAGCAATGAAACCTTCTAATATGACTGAAGTTATACACAGCGGTCCATGGCTAGATGATTTAAATGACAAGAATTGGAAGAGGATAACATTTTTGGATGAGGGCCAAAAAATAACAACGATAactaaataactaaataactaaaAGTGTTATAAAAAGAAAAATGCCTGAGGTGTGTAGCTTCCTACTCCGCAGTTTGGTCATTTGGCGTtaaatagaacactacaacaaAGTCGTGCAGTCTCCAAGGTCATCTATCTAGAAAGAGAAAAGCAGTGCAGTCTGTCTCCAAGGTCATCTATCTAGAAAGAGAAAAGCAGTGCAGTCTGTCTCCAAGGTCATCTATCTAGAAAGAGAAAAGCAGTGCAGTCTGTCTCCAAGGTCATCTAACTAGAAAGAGAAAAGCAGTGCAGTCTGTCTCCAAGGTCATCTAACTAGAAAGAGGATAAGAAAGCAAGTCTTGTGGCATTCTGGGTTTCAAAAAGAAAAGGAAATCGTCTCTGAAATCATGAAATAGCTCATacctgtgtgttttgttgtgtgcgTGTGGGACTGCGTGTGCTTGAGAACTGCGAACCAAAAAACATGATTGTACAACAGTCTAACATGCCCATTTCAGGGAGAATAAGAAAGGTCTTtggggaggagagcgagagaacagaaAGGAGACACCTTCCAGGACTGAGCATGTCTGTGACAGTGGGTCTAATGTAGGACCCCAGGTAGAACCCACTTCCCCCAGACATACCACACTGCTCCTCCATGCATACACACAGTAACAGGTTGTTGGTCGACAGACAAACTGACAGTCCAGGTTGGTAAATTGGCAACTAGTACATTGTCACACGGTGGTCTTGCCGAAATACTTTTAAAatatcttcttctttttgttcttTTCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1782996 lncRNA downstream 36727 49876508 ~ 49884470 (-) True G1558459
TU1782749 lncRNA downstream 73771 49847163 ~ 49847426 (-) True G1558254
TU1782706 lncRNA downstream 168105 49746279 ~ 49753092 (-) False G1558215
TU1782709 lncRNA downstream 168105 49746279 ~ 49753092 (-) True G1558215
TU1782675 lncRNA downstream 216852 49697669 ~ 49704345 (-) True G1558196
TU1783107 lncRNA upstream 69452 49992109 ~ 50001982 (-) True G1558551
TU1783113 lncRNA upstream 83687 50006344 ~ 50006578 (-) True G1558557
TU1783207 lncRNA upstream 228241 50150898 ~ 50151114 (-) True G1558639
TU1783217 lncRNA upstream 235142 50157799 ~ 50158258 (-) True G1558649
TU1783209 lncRNA upstream 237030 50159687 ~ 50164221 (-) True G1558641
XM_036953002.1 mRNA downstream 124222 49767140 ~ 49796975 (-) False LOC110496426
XM_036953003.1 mRNA downstream 124222 49767140 ~ 49796975 (-) False LOC110496426
XM_036953004.1 mRNA downstream 124222 49767140 ~ 49796975 (-) False LOC110496426
XM_036953005.1 mRNA downstream 124222 49767140 ~ 49796975 (-) True LOC110496426
XM_036953006.1 mRNA downstream 137053 49767140 ~ 49784144 (-) False LOC110496426
XM_021572330.2 mRNA upstream 50797 49973454 ~ 49982568 (-) False LOC110496431
XM_021572331.2 mRNA upstream 50797 49973454 ~ 49982570 (-) True LOC110496431
XM_036953014.1 mRNA upstream 100430 50023087 ~ 50034167 (-) False LOC110496434
XM_036953016.1 mRNA upstream 182625 50105282 ~ 50141405 (-) False LOC110496842
XM_036953015.1 mRNA upstream 182625 50105282 ~ 50143368 (-) True LOC110496842
TU1780876 other downstream 1564350 48356613 ~ 48356847 (-) True G1556577
TU1780583 other downstream 1937588 47982883 ~ 47983609 (-) True LOC110496401
TU1780537 other downstream 1975623 47904839 ~ 47945574 (-) True LOC110496837
TU1779770 other downstream 2374626 47543560 ~ 47546571 (-) False G1555543
TU1779304 other downstream 3008282 46911977 ~ 46912915 (-) True G1555168
TU1783089 other upstream 45239 49967896 ~ 49968608 (-) True G1558535
TU1783125 other upstream 100434 50023091 ~ 50034141 (-) True LOC110496434
TU1783393 other upstream 433612 50356269 ~ 50359030 (-) True LOC110496438
TU1783548 other upstream 514340 50436997 ~ 50437459 (-) True G1558916
TU1783852 other upstream 700434 50623091 ~ 50623983 (-) True G1559205

Expression Profile