RNA id: TU1783089


Basic Information

Item Value
RNA id TU1783089
length 713
RNA type TUCP
GC content 0.42
exon number 1
gene id G1558535
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 49967896 ~ 49968608 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aacaaatcaaaaacggaaaaattgggcgtgcaaaattattcagcccctttactttcagtgcagcaaactctctgtctctctgaatgatccaatgttgacctaaatgactaatgatgataaatacaatccacctgtgtgtaatcaagtctccgtataaatgcacctgcactgtgatagtctcagaggtccgttaaaagcgcagagagcatcatgaagaacaaggaacacaccaggcaggtccgagatactgttgtgaagaagtttaaagccggatttggatacaaaaagatttcccaagctttaaacatcccaaggagcactgtgcaagcgataatattgaaatggaaggagtatcagaccactgcaaatctaccaagacctggccgtccctctaaactttcagctcatacaaggagaagactgatcagagatgcagccaagaggcccatgatcactctggatgaactgcagagatctacagctgaggtgggagactctgtccataggacaacaatcagtctcgtatattgcacaaatctggcctttatggaagagtggccatttcttaaagatatccataaaaatggttgtttaaagtttgccacaagccacctgggagacacaccaaacatgtggaagaaggtgctttggtcagatgaaaccaaaattgaactttttggcaacaatgcaaaacgttatgtttggcgtaaaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1783002 lncRNA downstream 45205 49921197 ~ 49922691 (-) False G1558460
TU1783010 lncRNA downstream 45205 49921197 ~ 49922691 (-) False G1558460
TU1783011 lncRNA downstream 45205 49921197 ~ 49922691 (-) True G1558460
TU1783004 lncRNA downstream 45239 49921197 ~ 49922657 (-) False G1558460
TU1783006 lncRNA downstream 45239 49921197 ~ 49922657 (-) False G1558460
TU1783107 lncRNA upstream 23501 49992109 ~ 50001982 (-) True G1558551
TU1783113 lncRNA upstream 37736 50006344 ~ 50006578 (-) True G1558557
TU1783207 lncRNA upstream 182290 50150898 ~ 50151114 (-) True G1558639
TU1783217 lncRNA upstream 189191 50157799 ~ 50158258 (-) True G1558649
TU1783209 lncRNA upstream 191079 50159687 ~ 50164221 (-) True G1558641
XM_036953002.1 mRNA downstream 170921 49767140 ~ 49796975 (-) False LOC110496426
XM_036953003.1 mRNA downstream 170921 49767140 ~ 49796975 (-) False LOC110496426
XM_036953004.1 mRNA downstream 170921 49767140 ~ 49796975 (-) False LOC110496426
XM_036953005.1 mRNA downstream 170921 49767140 ~ 49796975 (-) True LOC110496426
XM_036953006.1 mRNA downstream 183752 49767140 ~ 49784144 (-) False LOC110496426
XM_021572330.2 mRNA upstream 4846 49973454 ~ 49982568 (-) False LOC110496431
XM_021572331.2 mRNA upstream 4846 49973454 ~ 49982570 (-) True LOC110496431
XM_036953014.1 mRNA upstream 54479 50023087 ~ 50034167 (-) False LOC110496434
XM_036953016.1 mRNA upstream 136674 50105282 ~ 50141405 (-) False LOC110496842
XM_036953015.1 mRNA upstream 136674 50105282 ~ 50143368 (-) True LOC110496842
TU1780876 other downstream 1611049 48356613 ~ 48356847 (-) True G1556577
TU1780583 other downstream 1984287 47982883 ~ 47983609 (-) True LOC110496401
TU1780537 other downstream 2022322 47904839 ~ 47945574 (-) True LOC110496837
TU1779770 other downstream 2421325 47543560 ~ 47546571 (-) False G1555543
TU1779304 other downstream 3054981 46911977 ~ 46912915 (-) True G1555168
TU1783125 other upstream 54483 50023091 ~ 50034141 (-) True LOC110496434
TU1783393 other upstream 387661 50356269 ~ 50359030 (-) True LOC110496438
TU1783548 other upstream 468389 50436997 ~ 50437459 (-) True G1558916
TU1783852 other upstream 654483 50623091 ~ 50623983 (-) True G1559205
TU1783839 other upstream 666795 50635403 ~ 50650253 (-) True thsd7aa

Expression Profile