RNA id: TU1783425


Basic Information

Item Value
RNA id TU1783425
length 1354
lncRNA type intronic
GC content 0.42
exon number 2
gene id G1558804
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 50306757 ~ 50309048 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcttaaagcatcagacaagctcagtgcatatagtggatatgattaaaacacataggatgtGTCTATATGTGGAAAAATACACCGTATAATATTTTGGTTAAACATCCATTGGTTGAAAGAACTGACGACTCTTAGTCGATGACTATTTTATTttgtcagggacagccctaattTGAACAAGGTTGTAGGCAGCTATGCTACGGTGTCCTATGTTCTAGTACTATGCTGCGGTATCCTATGTTCTAGTACTATGCTACAGTGTCCTATGTTCTAGTACTATGCTACGGTGTCCTATGTTCTAGTACTATGCTACAGTGTCCTATGTTCTTGTACTATGCTACAGTGTCCTATGTTCTAGTACTATGCTACAGTGTCCTATGTTCTAGTACTATGCTACAGTGTCCTATGTTCTAGTACTATGCTACGGTTATCCTGTCTCCTTGTAGTGAGTGAGTTGTTCTAATGAGCTTGTAAATGCCTTGCaatggtctctctttctctctttctttctctgtctctccccattcATTACCTCCTCTTGACCACCTTGTAAAACAATGCCTCTTTAATAATATCTCAGTACCGTTCTACCGCCCGACACTAAATCAAAAAGTGGGAGGCTATAGGAGAATTCCCATAATCCGCTCCCACCATTTCTATAGAGAAAATTCACAGAACTACTTTGTCACGGGACGGGATGCGGGAGTCAATGGCTGAGTGCTTTGTGGCGTATTGATCTCCCGTCACGTGAACACCCTCCATGTAATTGCACTGCCCTCTTGTGATAAATTCAATGCCGTTGTTTCGGACACTCCCAAGGCACCACACCGCAAGGCCTGTGCTGGCCCGGGAAGAAGAGAGAGCTGCGACTGTTCCATAAATGGACGACTCTTTCTCTTTGCATGTGGTGCAACAACGACGTTGTAAAGAAATCCCATATCAAAGGATCCCCGGCCCGGATTTGATGTGTTCATGGGGTTATTTGTTGCTTGTTTGACATTATTTTAACCAAAGGATGACTTTGTCAATGTGTTTGACAATAGTGATGGTTGTGATGATGacaatgttgttgttgatgatgatcaTCTTGGAGTGTGTTATTCAAGGCCAACCGACGCCGCGTTGTTTTCCATGTAGTTCATCTACAAAGAGGCTAATCAAAGTACTGCATGAGGATTAATCCCCAAACAAGTAAACAACATTTATTCACCACTAACAAACATGTAGAAAATGTCTATTTTCTTGACTTGACTCATTGAAGTGTTTTTCATCTATCTGATTTACGCTACAGCACGTTATGTTGCACTTTGGTTGTCCAGCAGCTGTACCACAACCACTAGTATCACTCTCCCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1783404 lncRNA downstream 40882 50264557 ~ 50265875 (-) True G1558784
TU1783301 lncRNA downstream 50828 50255547 ~ 50255929 (-) True G1558713
TU1783299 lncRNA downstream 51351 50255080 ~ 50255406 (-) True G1558711
TU1783296 lncRNA downstream 52594 50253707 ~ 50254163 (-) False G1558709
TU1783391 lncRNA upstream 5300 50314348 ~ 50314986 (-) False LOC110496438
TU1783392 lncRNA upstream 5354 50314402 ~ 50321331 (-) False LOC110496438
TU1783463 lncRNA upstream 61593 50370641 ~ 50370910 (-) True G1558841
TU1783509 lncRNA upstream 89798 50398846 ~ 50401375 (-) True G1558877
TU1783537 lncRNA upstream 114937 50423985 ~ 50424198 (-) True G1558905
XR_005037496.1 mRNA downstream 109543 50152023 ~ 50197214 (-) True LOC118941183
NM_001165089.2 mRNA downstream 157152 50148304 ~ 50149605 (-) True rfa3
XM_036953015.1 mRNA downstream 163389 50105282 ~ 50143368 (-) True LOC110496842
XM_036953016.1 mRNA downstream 165352 50105282 ~ 50141405 (-) False LOC110496842
XM_036953014.1 mRNA downstream 272590 50023087 ~ 50034167 (-) False LOC110496434
XM_021572349.2 mRNA upstream 7536 50316584 ~ 50359131 (-) False LOC110496438
XM_036953026.1 mRNA upstream 7536 50316584 ~ 50359131 (-) False LOC110496438
XM_036953027.1 mRNA upstream 234331 50543379 ~ 50592411 (-) True LOC110496443
XM_021572358.2 mRNA upstream 290907 50599955 ~ 50755992 (-) False thsd7aa
XM_021572364.2 mRNA upstream 688475 50997523 ~ 51012139 (-) False LOC110496448
TU1783125 other downstream 272616 50023091 ~ 50034141 (-) True LOC110496434
TU1783089 other downstream 338149 49967896 ~ 49968608 (-) True G1558535
TU1780876 other downstream 1949910 48356613 ~ 48356847 (-) True G1556577
TU1780583 other downstream 2323148 47982883 ~ 47983609 (-) True LOC110496401
TU1780537 other downstream 2361183 47904839 ~ 47945574 (-) True LOC110496837
TU1783393 other upstream 47221 50356269 ~ 50359030 (-) True LOC110496438
TU1783548 other upstream 127949 50436997 ~ 50437459 (-) True G1558916
TU1783852 other upstream 314043 50623091 ~ 50623983 (-) True G1559205
TU1783839 other upstream 326355 50635403 ~ 50650253 (-) True thsd7aa
TU1785000 other upstream 904107 51213155 ~ 51214144 (-) True LOC110496463

Expression Profile