RNA id: TU1783463


Basic Information

Item Value
RNA id TU1783463
length 270
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G1558841
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 50370641 ~ 50370910 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccactccaataccttgactttgttgtccttaagccattgtgCCACAACTGTGGAAAAGCTTAaaaattcctgactgatgtcttgagatgttgcttcaatatatccacataattttcttacctcatgatgccatctactgtattttgtgaagtgcaccagcccctcctgcagcaaagttatatttttatttcatcagatcagaggacatttcttcaaaaagtacgatctttgtccccatgtgcagttgaaaaccgtagtctggctttttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1783392 lncRNA downstream 49310 50314402 ~ 50321331 (-) False LOC110496438
TU1783391 lncRNA downstream 55655 50314348 ~ 50314986 (-) False LOC110496438
TU1783425 lncRNA downstream 61593 50306757 ~ 50309048 (-) True G1558804
TU1783404 lncRNA downstream 104766 50264557 ~ 50265875 (-) True G1558784
TU1783301 lncRNA downstream 114712 50255547 ~ 50255929 (-) True G1558713
TU1783509 lncRNA upstream 27936 50398846 ~ 50401375 (-) True G1558877
TU1783537 lncRNA upstream 53075 50423985 ~ 50424198 (-) True G1558905
TU1783549 lncRNA upstream 66808 50437718 ~ 50438278 (-) True G1558917
TU1783567 lncRNA upstream 81231 50452141 ~ 50452376 (-) True G1558935
TU1783569 lncRNA upstream 82144 50453054 ~ 50453283 (-) True G1558937
XM_036953024.1 mRNA downstream 11509 50256021 ~ 50359132 (-) False LOC110496438
XM_036953025.1 mRNA downstream 11509 50256021 ~ 50359132 (-) False LOC110496438
XM_021572345.2 mRNA downstream 11509 50256022 ~ 50359132 (-) False LOC110496438
XM_021572346.2 mRNA downstream 11509 50256022 ~ 50359132 (-) False LOC110496438
XM_021572347.2 mRNA downstream 11509 50256022 ~ 50359132 (-) False LOC110496438
XM_036953027.1 mRNA upstream 172469 50543379 ~ 50592411 (-) True LOC110496443
XM_021572358.2 mRNA upstream 229045 50599955 ~ 50755992 (-) False thsd7aa
XM_021572364.2 mRNA upstream 626613 50997523 ~ 51012139 (-) False LOC110496448
XM_021572365.2 mRNA upstream 626613 50997523 ~ 51012139 (-) True LOC110496448
XM_021572367.2 mRNA upstream 675492 51046402 ~ 51049503 (-) True LOC110496450
TU1783393 other downstream 11611 50356269 ~ 50359030 (-) True LOC110496438
TU1783125 other downstream 336500 50023091 ~ 50034141 (-) True LOC110496434
TU1783089 other downstream 402033 49967896 ~ 49968608 (-) True G1558535
TU1780876 other downstream 2013794 48356613 ~ 48356847 (-) True G1556577
TU1780583 other downstream 2387032 47982883 ~ 47983609 (-) True LOC110496401
TU1783548 other upstream 66087 50436997 ~ 50437459 (-) True G1558916
TU1783852 other upstream 252181 50623091 ~ 50623983 (-) True G1559205
TU1783839 other upstream 264493 50635403 ~ 50650253 (-) True thsd7aa
TU1785000 other upstream 842245 51213155 ~ 51214144 (-) True LOC110496463
TU1785112 other upstream 1011762 51382672 ~ 51455285 (-) False G1560339

Expression Profile