RNA id: TU1783940


Basic Information

Item Value
RNA id TU1783940
length 438
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G1559293
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 50771414 ~ 50771851 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcactcatgtgttccaatggcacgttctgttagctaatccaagtttatcattttaaaaggctaattgatcattagaaaacccttttgcaattattttagcacagctgaaaactattgtgcctattaaagaagcaataaaactggccttctttagactagttgagtatctggagcatcagcatttgtgggtttgattacaggctcaaaatggccagaaacaaagcactttcttctgaaacccgtcagtctattcttgttctgagaaggctattccatgagagaaattggcaagaaactgaagatctcgtacaacgctgtgaattactcccttcacagaacagcgcaaactgtctctaaccagaatagaaagaggagtgggaggccccggtgcaaactgagcaagaggacaagtgcattagtgtctagtttgagaaacag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1783933 lncRNA downstream 10070 50761076 ~ 50761344 (-) True G1559286
TU1783929 lncRNA downstream 19192 50752023 ~ 50752222 (-) True G1559282
TU1783924 lncRNA downstream 27940 50743205 ~ 50743474 (-) True G1559277
TU1783906 lncRNA downstream 46780 50724344 ~ 50724634 (-) True G1559259
TU1783900 lncRNA downstream 54061 50717133 ~ 50717353 (-) True G1559253
TU1783945 lncRNA upstream 3940 50775791 ~ 50776006 (-) True G1559298
TU1784758 lncRNA upstream 48699 50820550 ~ 50831810 (-) True G1560047
TU1784759 lncRNA upstream 51201 50823052 ~ 50827733 (-) True G1560048
TU1784775 lncRNA upstream 93405 50865256 ~ 50866640 (-) True G1560064
TU1784785 lncRNA upstream 98442 50870293 ~ 50882732 (-) True G1560073
XM_021572358.2 mRNA downstream 15422 50599955 ~ 50755992 (-) False thsd7aa
XM_036953027.1 mRNA downstream 179003 50543379 ~ 50592411 (-) True LOC110496443
XM_036953022.1 mRNA downstream 412282 50256022 ~ 50359132 (-) False LOC110496438
XM_021572364.2 mRNA upstream 225672 50997523 ~ 51012139 (-) False LOC110496448
XM_021572365.2 mRNA upstream 225672 50997523 ~ 51012139 (-) True LOC110496448
XM_021572367.2 mRNA upstream 274551 51046402 ~ 51049503 (-) True LOC110496450
XM_021572366.2 mRNA upstream 280916 51052767 ~ 51067584 (-) True LOC110496449
XM_021572371.2 mRNA upstream 322241 51094092 ~ 51096890 (-) False agr2
TU1783839 other downstream 121161 50635403 ~ 50650253 (-) True thsd7aa
TU1783852 other downstream 147431 50623091 ~ 50623983 (-) True G1559205
TU1783548 other downstream 333955 50436997 ~ 50437459 (-) True G1558916
TU1783393 other downstream 412384 50356269 ~ 50359030 (-) True LOC110496438
TU1783125 other downstream 737273 50023091 ~ 50034141 (-) True LOC110496434
TU1785000 other upstream 441304 51213155 ~ 51214144 (-) True LOC110496463
TU1785112 other upstream 610821 51382672 ~ 51455285 (-) False G1560339
TU1786046 other upstream 1407469 52179320 ~ 52183207 (-) True trak1b
TU1786055 other upstream 1477503 52249354 ~ 52250489 (-) True G1561167
TU1786137 other upstream 1584901 52356752 ~ 52357310 (-) False LOC110496491

Expression Profile