RNA id: TU1785112


Basic Information

Item Value
RNA id TU1785112
length 2317
RNA type TUCP
GC content 0.45
exon number 3
gene id G1560339
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 51381731 ~ 51455285 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAACTTTTATTGCACATTCCTGTTTGGTCTTGCAACGACCTTTCACCTTTTGAACTTTTGACCTCGGCCTGGACTAGACACTTCAATCgggagtagggtgaagttgccccaaGAAGCTGATCTAGGGGCAGATGTGCGTATTCCATTGTAATCGTGAAGGTTAGGATTTAGgcagggtaagctgatcctagatctgtgcctaagggcAACTTCTACCCGAGCAGTACCGAAGTCTGGAACCAGAAAAAGAAGGATGGACATCAGTGATATCACAGAAGGGAGTAGGAAATACACGTGAGAGCAGATCCGATTGATCCTTCAGTTCCAGTGGGTTCCATAGAGTTCTGCTCCCAGTGAGATTAGTTCCTGGAGAATGTTGACATCATTGTCTAGTCCTTCTTAATCTGGTTCTTTGAAAGTTCCCTACAAAATATACAACTGAACACCCTCCTTCTGACACAGATAAGCATCATCATTCTTAGTTCGGATTTATTTCTCTTTTTCTGTGACAATACCTGCGACATGCTTCAACATCTTCATTTTGGCAAACCACAAATAAATTAAAACACAAACATTCAAAGAACATAACGTGAAAGTATTTTTTAGGAAGTCGGAACGAAAAATCTAAATACAGAAAACGTAAATCAAGAGAACAAGAGAAGATCAGCATTTTGCTGTTCGTGTTTTACCCCGTCGTCGTTTTTTCCGTTGTTTTTCTTGAAAAAAAGATAGCTAGCTACCAATCACTTACCACATGCAGATATAATACAACAGAACTGATTCACCCAGTTAGTGTCTGCAAACTAACGATCTAAACTATATCACAAAATGATTCTCTTTAAACCAGCAAACACCCAATTTGGAGATATTTTGTCTTATATTAATTCTTAATTTTACAGTAGTTTTCTCCTCTCATCGTAAGCACAGAGAAACGCCCACAGCCAACCCTGACTTGACTGTCCCCAACAGAAAAGGAAGAAGACAGTCAGCACTGACTTAGGCCTCATCCCATTGGCACCCTAAttcctacatagggctctggtcacaagtagtgcactagatgggTAATACAGTAGGGTACCATTTTAAAACGTACCCTTTCTCATGATTAGATACCAGATGGGGATGTCTTTAACTGTGTCCAAGAGACCGTCACACACGAGACaaccactctcacacacatatcaCCCCCCTGATGATGAACATCGTCTATAAGGATGTACTGTATGAACATTGCTTTACACACAATGTAAAACAAAAAGTGAGTTTGTCTAGAACCCCCGACCCAGcagtgcagggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagcagagcagagcaggaggtGTGACGTCATCACTCTCACTAGTTATTCATCTGACAACTCTCTGGTCAAATGTCACAGCAATTAGCAACTAGCTCCTTGTGGTGCTCATTTCCAGCCACATATACTGTACAGCATAACAAGAGGGATGTTGaagctacagtgtgtgtgtgtgtgtgtgtttgtacacacacacacacacacatgctttttTTCAGCCATTCTGGATTCCAGCTGACATTTCGAGGAGCTGGCGGTAAACATCAAAGTttgcatccctctctccttccctctattcctccctctcttcctccctctctccttccctctcttcctccccctctcccctctctctccttcccctctcccttcccctctccctccctctctccctccctatctccctccctccctccagacatTAATCAGGAGCTCACTGAGACACAGTCATCTCTCAGAGGGCACTTGCTTATTattccaccactccatcctcgCCAGAGTTCTGCTCTGTCCATCCTAATTTAGGGATGTTATCATCACACACAGCCAcgctggcaggtgtgtgtgtgtgcacgcgagCCAACGCTAAATGCTGAGTGTGCATGTGATGTACCAATGCACACACCTTTCAGGGGCCTGATTATTAGCTTGACCATCTGGTACCTAAATCATGGATTATGAATTATAGCTGCTGGTCTTCATCTATACATGATAatgtgaccagagagagagagagaaaggggagagagagagagagagacagagagagagagacagtgagagagagagacagtgagagagagacagcgagagagagagaaagagagagagatagagagagacagagagagagagacaaagagagagagagagagacagagagagagagagagagagagagagacagtgagagagagacagcgagagagaaagagcgagagagagagagagagagacaatgagagagagagagagagagagagagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1785050 lncRNA downstream 76334 51306138 ~ 51306338 (-) True G1560300
TU1785049 lncRNA downstream 78836 51303629 ~ 51303836 (-) True G1560299
TU1785032 lncRNA downstream 98125 51284232 ~ 51284547 (-) True G1560286
TU1784999 lncRNA downstream 170967 51211296 ~ 51211705 (-) True G1560253
TU1784997 lncRNA downstream 174458 51208006 ~ 51208214 (-) True G1560251
TU1785189 lncRNA upstream 28961 51484246 ~ 51485096 (-) True G1560406
TU1785202 lncRNA upstream 70601 51525886 ~ 51526519 (-) True G1560419
TU1785201 lncRNA upstream 71331 51526616 ~ 51527950 (-) True G1560418
TU1785205 lncRNA upstream 73648 51528933 ~ 51529135 (-) True G1560422
TU1785212 lncRNA upstream 85777 51541062 ~ 51542056 (-) True G1560429
XM_021572391.2 mRNA downstream 147744 51230478 ~ 51234928 (-) True LOC110496464
XR_002469558.2 mRNA downstream 168274 51213151 ~ 51214398 (-) False LOC110496463
XM_021572390.2 mRNA downstream 168543 51213151 ~ 51214129 (-) False LOC110496463
XM_021572388.2 mRNA downstream 177440 51168766 ~ 51205232 (-) True LOC110496461
XM_036953033.1 mRNA downstream 214534 51155414 ~ 51168138 (-) False LOC110496455
XM_021572397.2 mRNA upstream 31327 51486612 ~ 51494390 (-) False LOC110496470
XM_036953048.1 mRNA upstream 31327 51486612 ~ 51503794 (-) True LOC110496470
XM_036953075.1 mRNA upstream 724035 52179320 ~ 52219848 (-) False trak1b
XM_036953076.1 mRNA upstream 797162 52252447 ~ 52259084 (-) False zgc:110239
XM_021572417.2 mRNA upstream 797162 52252447 ~ 52259991 (-) True zgc:110239
TU1785000 other downstream 168528 51213155 ~ 51214144 (-) True LOC110496463
TU1783839 other downstream 732419 50635403 ~ 50650253 (-) True thsd7aa
TU1783852 other downstream 758689 50623091 ~ 50623983 (-) True G1559205
TU1783548 other downstream 945213 50436997 ~ 50437459 (-) True G1558916
TU1783393 other downstream 1023642 50356269 ~ 50359030 (-) True LOC110496438
TU1786046 other upstream 724035 52179320 ~ 52183207 (-) True trak1b
TU1786055 other upstream 794069 52249354 ~ 52250489 (-) True G1561167
TU1786137 other upstream 901467 52356752 ~ 52357310 (-) False LOC110496491
TU1786175 other upstream 1189704 52644989 ~ 52647777 (-) True G1561279
TU1788031 other upstream 2143365 53598650 ~ 53602694 (-) True G1562762

Expression Profile