RNA id: TU1785202


Basic Information

Item Value
RNA id TU1785202
length 562
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G1560419
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 51525886 ~ 51526519 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cactgtccAGAGGTCTCCAGAACTTTCTCCCCTGCTAAGAAGAAAGACCCTTTAGCCTTTAGAGCACCTAGTTTTTTAGGGCATGTCTAAATGgtaccctatcccctatgtagttcactacttgACATAGGGGGTAAGTTGCCATTTCACACCACTCACCAATCTTCAGGTCATTTTTGCTATTCCTTCATCTAACTCCACCACCATACCATGCACATCTTTAAAAAATGacatacatacactaccagaAACACACTTGGAGCATACAATATGTATTTGGCCTGTGCCAAACTCCTGCAATGGGGAAGAGTTTTCAGCTCTACTCTACACTAGGACTGAGTAGCGGAAATGGCACAAACGTTAGGTGACTAAGTCCTCCTATGactgacacgcacgcacgcacgcacacacacacacaagcaccaaATAAAGATAAGGGTTTTAAAAACAACAGCTATGGTTTGGGCGTGAATAAGAACTCAGTCCACTGTGACTCTGCTATAGTAAGAGCTCACTCAGTCAGTCCACTGTGACTCTGCTATAGTAAGAGCTCAGTCAGTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1785189 lncRNA downstream 40790 51484246 ~ 51485096 (-) True G1560406
TU1785102 lncRNA downstream 70601 51381731 ~ 51455285 (-) False G1560339
TU1785107 lncRNA downstream 70601 51444406 ~ 51455285 (-) True G1560339
TU1785050 lncRNA downstream 219548 51306138 ~ 51306338 (-) True G1560300
TU1785049 lncRNA downstream 222050 51303629 ~ 51303836 (-) True G1560299
TU1785201 lncRNA upstream 97 51526616 ~ 51527950 (-) True G1560418
TU1785205 lncRNA upstream 2414 51528933 ~ 51529135 (-) True G1560422
TU1785212 lncRNA upstream 14543 51541062 ~ 51542056 (-) True G1560429
TU1785116 lncRNA upstream 21890 51548409 ~ 51548856 (-) True G1560340
TU1785352 lncRNA upstream 258279 51784798 ~ 51789430 (-) False G1560561
XM_036953048.1 mRNA downstream 22092 51486612 ~ 51503794 (-) True LOC110496470
XM_021572397.2 mRNA downstream 31496 51486612 ~ 51494390 (-) False LOC110496470
XM_021572393.2 mRNA downstream 96510 51426740 ~ 51429376 (-) True LOC110496466
XM_021572391.2 mRNA downstream 290958 51230478 ~ 51234928 (-) True LOC110496464
XR_002469558.2 mRNA downstream 311488 51213151 ~ 51214398 (-) False LOC110496463
XM_036953075.1 mRNA upstream 652801 52179320 ~ 52219848 (-) False trak1b
XM_036953076.1 mRNA upstream 725928 52252447 ~ 52259084 (-) False zgc:110239
XM_021572417.2 mRNA upstream 725928 52252447 ~ 52259991 (-) True zgc:110239
XM_036953082.1 mRNA upstream 734848 52261367 ~ 52267803 (-) False sytl1
XM_036953081.1 mRNA upstream 734848 52261367 ~ 52268634 (-) False sytl1
TU1785112 other downstream 70601 51382672 ~ 51455285 (-) False G1560339
TU1785000 other downstream 311742 51213155 ~ 51214144 (-) True LOC110496463
TU1783839 other downstream 875633 50635403 ~ 50650253 (-) True thsd7aa
TU1783852 other downstream 901903 50623091 ~ 50623983 (-) True G1559205
TU1783548 other downstream 1088427 50436997 ~ 50437459 (-) True G1558916
TU1786046 other upstream 652801 52179320 ~ 52183207 (-) True trak1b
TU1786055 other upstream 722835 52249354 ~ 52250489 (-) True G1561167
TU1786137 other upstream 830233 52356752 ~ 52357310 (-) False LOC110496491
TU1786175 other upstream 1118470 52644989 ~ 52647777 (-) True G1561279
TU1788031 other upstream 2072131 53598650 ~ 53602694 (-) True G1562762

Expression Profile