RNA id: TU1785377


Basic Information

Item Value
RNA id TU1785377
length 3054
lncRNA type antisense_over
GC content 0.48
exon number 2
gene id G1560579
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 51863529 ~ 51866710 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggggggggggagacaatgcaaatagtcttggtagccatttgattagctgttcagaagtcttatgacttgggggtagaagctgttaagaagacttttggacctagacttggcgctccggtactgcatgctgtgcggtagcagagagaacagactatgaCTACGTTGGCTagaatctttgacaatttttagggccttcatctgacaccgcctggtatagaggtcctgggatggcaggaagcttggccccagtgatgtactgggccgtacgcacaaccctctgtagtgccttgcggtcagaggccgagcagttgccataccaggcagtaatgcaaccagtcaggatgctctcgatggtgcagctgtagaaccttttgaggatctgaggacccatgccaaatcttttcagtctcctgaaggggaataggctttgccatcttcacgactgtcttggtgtgtttggaccatgatagtttgttggtgatgtggacaacaaggaacttgaagctctcaagctAGTCCACTACAGTTCCGTCGATGACAATGGGGGCAtactcagtcctccttttcctgtagtcatcAACAATCATCTCCATTgccttgatcacattgagggagaggttgttatcctggcaccacacggccaggtctctaacctcctccctataggctgtctcatcgttctcggtgatcaggcctaccactgttgtgttgtcggcaaacttaatgatggtgttggagtcgtttctggccatgcagtcatgggtgaacaaagagtagaggaggggactgagcacgcacccctgaggggcccccgtgttgtggatcagcgtggcagatgtattgttacttacccttaccacctgggggtggcccatcagcaagtccagcatccagttgcagagggaggtgttcagtcccagggtggagtgcaatagagattgcatcatctgtggatctgttggggcggggatgcaaattggagtgggtctagggtatctgggataatggtgttgatgtgatcaacctttcaaagcacttcatggctacagatgtgagagcttcgggcagtagtcatttaggcaggttaccttagttttcttgggtgcagggactatggtggtctgcttgaaatatgctgtcagggagaggttgaaaatgtcagtgaagacacttgccagttggtcagtgcatgctcggagtacacttcctggtaaCCCGTCTGAACCTGCGGCcttttgaatgttgacctgtttaaaggtcttactcacatcggctatggagagcgtgatcacacagtcttccggaacggCTGatacatgcttcagtgttgcttgcgagcatagaagttatttagctcatctggtaggctcgtgtcactggacagctcgtggctgtgctttcctttgtagtctgtaatagtttgcaagccctgccacatcggacgagcgttggagccggtgtagtatgattcaatcttagtcctgtattgatgctttgcctgtttgatggttcatcggagggcatagcgggatttcttataagcgtccgggttagagtcccgctccttgaaagtggcagcacTACCGTTAAACTCTGTgcgatgttgcctgtaatccatgccttctggtTGGGCATGTACGTACGGACACTGTGGACGACatcgtcgtcgatgcacttattgatgaagccagttaCTGATGTGGTggactcctcaatgccattggaagaatctgtgcaagaaaaacagtcctgtagctgagcatctgcgtcatctgaccgagtcactggtgcttcctgctttagttttagcatgtaagcaggaatcaggaggatagagttatggtcagatttgccaaatggagggcgaggaagagctttgtacacatctctgtgtgtggagtaaatgtggcCTAGAGTTATTTTTCctatggttgcacatttaacatgctgatagaaatgagctATAaattgatttaagtttccctgcattaaagtccctggccactaggagcgctgcctctggatgagtgttttcctgtttgcttatggccttatacagctcattgagtgtggtcttattgccagcattggtttgtggtggtaaatagacagctacgaacaatactctcttggtaaatagtgtggtctacagcttatcatgagatactctatctcAGGCGAGGAAaaccttaatattagattttgtgcaccagctgttgtttacaaatatacacagactgCCACCCCATGTCTTACttgaggcagctgttctatcttgtcgATGCAGCGTAAACCCTTCAAGCTGAAGGTTATCCGTGTTtatcgttcagccatgactcgtgaaacataagatgtttttaatgtcccgttggtaggatattcatgATCGTAGCTTgtctattttgttatccaatgattgtacgttggctaataggactgatggtggAGGCAGATTACACACTcgccgtcggatccttacaaggtaCCCAGACCAAAATCACAGATCTCTCCGTCTCTTTCACATGCGACTGACGGGGATTTGGgtcttgtcgggtgtctgaagtaaattcTTTGCGTTCGACTCGTTAAAGAAATAATctttgtccagtacgaggtgagtaatcgctgtcctgatatacagaagctattttcggtcataagagacagtgacataaacattatgtacaaaataagtcacAAATAACAATAGAACAATTGGTTAGGAgtccgtaaaacggcagccatctcctccggcgccatctaGCATTACTAAGTATTTATGAAATTACTGTTAAATGTTGTTACTAGTGTAATTATTACAGTACTACTATCCATGTATAAGAGCAAAGTAATGTAAAGTGTAGGGTACCTGAGCTGAGAGAAGATGGGTGGAGGAGGCTGGGACTGCCCAGAGCATTCATACGGTGACCACGTTTCTGACctccatgtctgtccctcctccactGCGGCACTCTGTGCTTCCAGAGGGTTCTCTATGACGCGTCCCGTCCTGCCAGAGAAGTCCATGGCCACCAGAGAGTTCTCAGACACACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1785421 lncRNA downstream 2718 51856696 ~ 51860811 (-) True G1560619
TU1785396 lncRNA downstream 62746 51795486 ~ 51800783 (-) True G1560596
TU1785357 lncRNA downstream 74066 51784798 ~ 51789463 (-) False G1560561
TU1785358 lncRNA downstream 74066 51784798 ~ 51789463 (-) True G1560561
TU1785356 lncRNA downstream 74099 51784798 ~ 51789430 (-) False G1560561
TU1785419 lncRNA upstream 2206 51868916 ~ 51874046 (-) True G1560618
TU1785465 lncRNA upstream 44286 51910996 ~ 51913901 (-) True G1560660
TU1785515 lncRNA upstream 100380 51967090 ~ 51971038 (-) False G1560701
TU1785518 lncRNA upstream 100620 51967330 ~ 51971038 (-) False G1560701
TU1785517 lncRNA upstream 100656 51967366 ~ 51971038 (-) False G1560701
XM_036953048.1 mRNA downstream 359735 51486612 ~ 51503794 (-) True LOC110496470
XM_021572397.2 mRNA downstream 369139 51486612 ~ 51494390 (-) False LOC110496470
XM_021572393.2 mRNA downstream 434153 51426740 ~ 51429376 (-) True LOC110496466
XM_021572391.2 mRNA downstream 628601 51230478 ~ 51234928 (-) True LOC110496464
XR_002469558.2 mRNA downstream 649131 51213151 ~ 51214398 (-) False LOC110496463
XM_036953075.1 mRNA upstream 312610 52179320 ~ 52219848 (-) False trak1b
XM_036953076.1 mRNA upstream 385737 52252447 ~ 52259084 (-) False zgc:110239
XM_021572417.2 mRNA upstream 385737 52252447 ~ 52259991 (-) True zgc:110239
XM_036953082.1 mRNA upstream 394657 52261367 ~ 52267803 (-) False sytl1
XM_036953081.1 mRNA upstream 394657 52261367 ~ 52268634 (-) False sytl1
TU1785112 other downstream 408244 51382672 ~ 51455285 (-) False G1560339
TU1785000 other downstream 649385 51213155 ~ 51214144 (-) True LOC110496463
TU1783839 other downstream 1213276 50635403 ~ 50650253 (-) True thsd7aa
TU1783852 other downstream 1239546 50623091 ~ 50623983 (-) True G1559205
TU1783548 other downstream 1426070 50436997 ~ 50437459 (-) True G1558916
TU1786046 other upstream 312610 52179320 ~ 52183207 (-) True trak1b
TU1786055 other upstream 382644 52249354 ~ 52250489 (-) True G1561167
TU1786137 other upstream 490042 52356752 ~ 52357310 (-) False LOC110496491
TU1786175 other upstream 778279 52644989 ~ 52647777 (-) True G1561279
TU1788031 other upstream 1731940 53598650 ~ 53602694 (-) True G1562762

Expression Profile