RNA id: TU1786008


Basic Information

Item Value
RNA id TU1786008
length 565
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G1561130
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 52126649 ~ 52169286 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggaaaaggctttgtcttgccctcttcacgtTTAGGCAATATGCATGCGCAAAATATAAAAAACGCTCAATGCAACGAATGAAGCTACTTCAGGCTAGGCAAAGCAGTGATGCCTATGCTGACCATGTCCTTTAACAGTGACTGGAGTCAGGAACGGCCACGCGTGTCAACGATTTGCATGGATGAAAAGGAAGGCATGaatacataagaatttgttcttaactgacatgcctagttaaataaaggcaaaataaTGTATGTTCTGAATGTgctaaatgtacaatatgttacactaatgttagctaactctAGTGGTTAGGGCTAATGTTAGGAGTTTGTCACTCCCTGGGCTGTTTCACCTGTCTTATGCTTGCCTccacccccaccaggtgtctcccattatcccctgtgtatttactGCTGGGTTTTCTGTTTGCCTGCTGTCAAGTCGTACGAGCGTGTTTAACGTTTTTCCTGTTCTCAAGTTTTTGTTTTCTAATGTTCCTGGTTCtgacctttctgtctgtctgtctgtctgtctgtctgtctgtctgtcctgagcctgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1785463 lncRNA downstream 148256 51977466 ~ 51978393 (-) True G1560658
TU1785532 lncRNA downstream 149925 51974939 ~ 51976724 (-) False G1560706
TU1785531 lncRNA downstream 149925 51976030 ~ 51976724 (-) True G1560706
TU1785524 lncRNA downstream 155611 51967460 ~ 51971038 (-) True G1560701
TU1785514 lncRNA downstream 155675 51967460 ~ 51970974 (-) False G1560701
TU1786032 lncRNA upstream 552 52169838 ~ 52170109 (-) True G1561154
TU1786033 lncRNA upstream 2418 52171704 ~ 52172049 (-) True G1561155
TU1786042 lncRNA upstream 10034 52179320 ~ 52240648 (-) False trak1b
TU1786089 lncRNA upstream 71992 52241278 ~ 52241515 (-) True G1561201
TU1786092 lncRNA upstream 78742 52248028 ~ 52248469 (-) False G1561204
XM_036953048.1 mRNA downstream 622855 51486612 ~ 51503794 (-) True LOC110496470
XM_021572397.2 mRNA downstream 632259 51486612 ~ 51494390 (-) False LOC110496470
XM_021572393.2 mRNA downstream 697273 51426740 ~ 51429376 (-) True LOC110496466
XM_021572391.2 mRNA downstream 891721 51230478 ~ 51234928 (-) True LOC110496464
XR_002469558.2 mRNA downstream 912251 51213151 ~ 51214398 (-) False LOC110496463
XM_036953075.1 mRNA upstream 10034 52179320 ~ 52219848 (-) False trak1b
XM_036953076.1 mRNA upstream 83161 52252447 ~ 52259084 (-) False zgc:110239
XM_021572417.2 mRNA upstream 83161 52252447 ~ 52259991 (-) True zgc:110239
XM_036953082.1 mRNA upstream 92081 52261367 ~ 52267803 (-) False sytl1
XM_036953081.1 mRNA upstream 92081 52261367 ~ 52268634 (-) False sytl1
TU1785112 other downstream 671364 51382672 ~ 51455285 (-) False G1560339
TU1785000 other downstream 912505 51213155 ~ 51214144 (-) True LOC110496463
TU1783839 other downstream 1476396 50635403 ~ 50650253 (-) True thsd7aa
TU1783852 other downstream 1502666 50623091 ~ 50623983 (-) True G1559205
TU1783548 other downstream 1689190 50436997 ~ 50437459 (-) True G1558916
TU1786046 other upstream 10034 52179320 ~ 52183207 (-) True trak1b
TU1786055 other upstream 80068 52249354 ~ 52250489 (-) True G1561167
TU1786137 other upstream 187466 52356752 ~ 52357310 (-) False LOC110496491
TU1786175 other upstream 475703 52644989 ~ 52647777 (-) True G1561279
TU1788031 other upstream 1429364 53598650 ~ 53602694 (-) True G1562762

Expression Profile