RNA id: TCONS_00005737


Basic Information

Item Value
RNA id TCONS_00005737
length 869
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id XLOC_002473
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 48851 ~ 51974 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCTATCAGCATCTGCTTTGCCTACAGCAGGATCAGCGGAGTGTGTAAGTGAGCCGTGCAGAGTTCATtctgactgcacacacacacacacacacacacacacacacacacacacacacacacactacttcaGCTCAGTGTGTTTCTGTTGCGCTCCTCACAGTGATCATCACGCAGATCCACTGAAGGAGCACATCATCACTGCACAGTCCAGACAAGAGCagctgaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgttatcTCCTGGCCTCGTGTTAAACTCTTACCTGTGACAGGCCCAGGTGTACTGAAGCGGTCTCTGAAATGTACAATATTTTACCGTCAGACGCGACGACAAACACAAACCCGTCCAGCGTCTGAAAATACAGATAACACAGCattaatgaaacacacacacacacacacactttcgaAGAGTTCAAATATTAATCAGACGCAAGAGAAGGCTGTCATGTGTTTGTTAGAGAGTCGCACCTGCAGCAGGTGAGAGCCCAGATCTTTAGCCATGATGTCCAGAGGACTGACCCGCGCAGACTGACCCCAGGCCTCTCCCAGacctctcacacaaacacacacacacacagagagagagagaaacacacacacacactcgtcacACGCACTTGTGAAAATAACAACACATTCCAAAACAAATCGCCGAGTCCTACAAACAGATCGCGGACTCTCAtgtgaattattgttattatcggGCTTTATTTCGTATGAAGACTAATATTTTGTGGGTTAaactattctttttttattggCCAATTTAAATCGCGCAGTTACACGGAGGAATTAATCTCGAAATTGTC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00004633 lncRNA downstream 3365 32901 ~ 45486 (-) False XLOC_002472
TCONS_00005735 lncRNA downstream 3508 38581 ~ 45343 (-) False XLOC_002472
TCONS_00005736 lncRNA downstream 3508 38709 ~ 45343 (-) True XLOC_002472
TCONS_00005954 lncRNA downstream 6008 38107 ~ 42843 (-) False XLOC_002472
TCONS_00005953 lncRNA downstream 18021 30306 ~ 30830 (-) True XLOC_002471
TCONS_00004643 lncRNA upstream 33546 85520 ~ 86348 (-) False XLOC_002476
TCONS_00005955 lncRNA upstream 115435 167409 ~ 169656 (-) False XLOC_002479
TCONS_00005956 lncRNA upstream 115435 167409 ~ 170420 (-) False XLOC_002479
TCONS_00005957 lncRNA upstream 115435 167409 ~ 175562 (-) True XLOC_002479
TCONS_00005958 lncRNA upstream 127889 179863 ~ 180704 (-) True XLOC_002480
TCONS_00004634 mRNA upstream 1613 53587 ~ 57270 (-) True XLOC_002474
TCONS_00004635 mRNA upstream 10395 62369 ~ 76352 (-) False XLOC_002475
TCONS_00004636 mRNA upstream 11232 63206 ~ 74408 (-) False XLOC_002475
TCONS_00004637 mRNA upstream 20076 72050 ~ 74424 (-) False XLOC_002475
TCONS_00004638 mRNA upstream 20076 72050 ~ 76367 (-) False XLOC_002475
TCONS_00004639 other upstream 20459 72433 ~ 74390 (-) False XLOC_002475
TCONS_00004640 other upstream 21476 73450 ~ 76191 (-) True XLOC_002475
TCONS_00004658 other upstream 287938 339912 ~ 340027 (-) True XLOC_002487
TCONS_00004703 other upstream 2814746 2866720 ~ 2875735 (-) False XLOC_002517
TCONS_00004704 other upstream 2816504 2868478 ~ 2875735 (-) True XLOC_002517

Expression Profile

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