RNA id: TU1785666


Basic Information

Item Value
RNA id TU1785666
length 205
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G1560831
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 52171768 ~ 52171972 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caggtggactttgtagttgtagaaacatctcaaggatgatcaatggaaacaggatgcacctgagctcaatttcgagtcattatggggtattatgtgtggATAGATGAGTTTTATTTTTtggtcaattttagaataaggctgttacttaacaaaatatggaaacagTGAAGGGGTCTGACTTCTTTATGAATGCACTCTATATGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1785665 lncRNA upstream 449 52171000 ~ 52171319 (+) True G1560830
TU1785664 lncRNA upstream 870 52170522 ~ 52170898 (+) True G1560829
TU1784661 lncRNA upstream 180190 51990629 ~ 51991578 (+) True G1559951
TU1784644 lncRNA upstream 209568 51960952 ~ 51962200 (+) True G1559938
TU1784418 lncRNA upstream 574378 51593546 ~ 51597390 (+) True G1559729
TU1785667 lncRNA downstream 183 52172155 ~ 52172573 (+) True G1560832
TU1785672 lncRNA downstream 7360 52179332 ~ 52240688 (+) True G1560836
TU1785704 lncRNA downstream 68827 52240799 ~ 52241048 (+) True G1560866
TU1785648 lncRNA downstream 74880 52246852 ~ 52247826 (+) True G1560813
TU1785707 lncRNA downstream 76137 52248109 ~ 52248605 (+) True G1560869
NM_001124611.1 mRNA upstream 11014 52155121 ~ 52160754 (+) True cck-n
XM_036953074.1 mRNA upstream 88298 52036488 ~ 52083470 (+) False LOC110496482
XM_021572408.2 mRNA upstream 151409 52003041 ~ 52020359 (+) False topaz1
XM_021572415.2 mRNA downstream 63425 52235397 ~ 52245444 (+) True si:dkey-166k12.1
XM_021572419.2 mRNA downstream 122696 52294668 ~ 52297220 (+) False LOC110496487
XR_002469561.2 mRNA downstream 168309 52340281 ~ 52345668 (+) True LOC110496490
XM_036953148.1 mRNA downstream 391558 52563530 ~ 52570280 (+) False zcchc17
XM_036953149.1 mRNA downstream 391881 52563853 ~ 52570280 (+) False zcchc17
TU1784684 other upstream 97739 52066842 ~ 52074029 (+) True LOC110496482
TU1783680 other upstream 1536202 50633743 ~ 50635566 (+) True G1559041
TU1782980 other upstream 1951641 50219754 ~ 50220127 (+) True G1558443
TU1782214 other upstream 2410802 49760428 ~ 49760966 (+) True G1557814
TU1782104 other upstream 2625959 49545549 ~ 49545809 (+) True G1557717
TU1785643 other downstream 84664 52256636 ~ 52257530 (+) True G1560811
TU1785750 other downstream 183325 52355297 ~ 52355835 (+) True G1560911
TU1785814 other downstream 269174 52441146 ~ 52441941 (+) False G1560957
TU1786576 other downstream 1003750 53175722 ~ 53178937 (+) True snrpd1
TU1786545 other downstream 1105818 53277790 ~ 53288465 (+) True G1561544

Expression Profile