RNA id: TU1786094


Basic Information

Item Value
RNA id TU1786094
length 825
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G1561204
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 52248028 ~ 52248852 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtgttcagctgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagttcaattttggtttcgtctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacaacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcattatacgactgattgttgtcctgtggacagagtctcccacctcagctgtagatctctgcagttcatccagagtggtcatgggcctcttggctgcatctctgatcagtcttctccttgtatgagctgaaagtttgagggacggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatatttttgtatccaaatccggctttaaacttcttcacaacagtatcttggacctgcctggtgtgttccttgttcttcatgatgctctctgcgcttttaacggacctctgagactatcacagtgcaggtgcatttatacggagacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatccttactgaacttctggagagagtttgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1786089 lncRNA downstream 6513 52241278 ~ 52241515 (-) True G1561201
TU1786042 lncRNA downstream 7380 52179320 ~ 52240648 (-) False trak1b
TU1786033 lncRNA downstream 75979 52171704 ~ 52172049 (-) True G1561155
TU1786032 lncRNA downstream 77919 52169838 ~ 52170109 (-) True G1561154
TU1786008 lncRNA downstream 78742 52126649 ~ 52169286 (-) True G1561130
TU1786096 lncRNA upstream 2624 52251476 ~ 52251818 (-) True G1561205
TU1786054 lncRNA upstream 11597 52260449 ~ 52260702 (-) True G1561166
TU1786052 lncRNA upstream 11926 52260778 ~ 52261179 (-) True G1561164
TU1786104 lncRNA upstream 36984 52285836 ~ 52286989 (-) True G1561213
TU1786110 lncRNA upstream 45707 52294559 ~ 52295157 (-) True G1561219
XM_036953075.1 mRNA downstream 28180 52179320 ~ 52219848 (-) False trak1b
XM_036953048.1 mRNA downstream 744234 51486612 ~ 51503794 (-) True LOC110496470
XM_021572397.2 mRNA downstream 753638 51486612 ~ 51494390 (-) False LOC110496470
XM_021572393.2 mRNA downstream 818652 51426740 ~ 51429376 (-) True LOC110496466
XM_021572391.2 mRNA downstream 1013100 51230478 ~ 51234928 (-) True LOC110496464
XM_036953076.1 mRNA upstream 3595 52252447 ~ 52259084 (-) False zgc:110239
XM_021572417.2 mRNA upstream 3595 52252447 ~ 52259991 (-) True zgc:110239
XM_036953082.1 mRNA upstream 12515 52261367 ~ 52267803 (-) False sytl1
XM_036953081.1 mRNA upstream 12515 52261367 ~ 52268634 (-) False sytl1
XM_036953078.1 mRNA upstream 12515 52261367 ~ 52269291 (-) False sytl1
TU1786046 other downstream 64821 52179320 ~ 52183207 (-) True trak1b
TU1785112 other downstream 792743 51382672 ~ 51455285 (-) False G1560339
TU1785000 other downstream 1033884 51213155 ~ 51214144 (-) True LOC110496463
TU1783839 other downstream 1597775 50635403 ~ 50650253 (-) True thsd7aa
TU1783852 other downstream 1624045 50623091 ~ 50623983 (-) True G1559205
TU1786055 other upstream 502 52249354 ~ 52250489 (-) True G1561167
TU1786137 other upstream 107900 52356752 ~ 52357310 (-) False LOC110496491
TU1786175 other upstream 396137 52644989 ~ 52647777 (-) True G1561279
TU1788031 other upstream 1349798 53598650 ~ 53602694 (-) True G1562762
TU1787983 other upstream 1373048 53621900 ~ 53628422 (-) False tomm7

Expression Profile