RNA id: TU1786130


Basic Information

Item Value
RNA id TU1786130
length 1359
lncRNA type intronic
GC content 0.40
exon number 3
gene id G1561239
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 52347881 ~ 52350303 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTACAGACTAGCTGTGTTTGAATGTTCATACTGACCGTACTATTTGTGACATAAATTGATTATGTGGCATGCATAGTGGTCAGTATGGATAGTTAGTATGGCAAAAGTTCCCGGACGTTGTACTACATTCAccaaaatacgaagtatacaagcagtggacaATATTTCTGTGCTTTTTGGGTCCATAATGaaattcttcagaaaatgggctTGGCTTCACAACATTTTTAGATTTAAAAAATGGCGGTAAAATATGCAGCAGGAGTCCGATGAGAgtggatacaaattcattgctttaactaattatgacaaagtgttgagcaatgtaataaagtaatgcgTTTTCAAATAAGTTAggttacacgttatgttggctgacaatttgttagctacggtAGCCTTACCGTAGCATAGCATATCATTTCAGCCATTGCTTGTATGCAGCGATTTtatcatgtaaatcttggtggggcaaagtCCCCCCaatttttttagatgcatgccaggaAAGCcattacacaacacaatacatttattGCACTATGACGGTGACAagcagtgcccacaaactgttagggcatacataaagctgtcccaacagcagggcatacataaagctgtcccaacagcagagcatacataaagctgtcccaacagcagggcatacataaagctgtcccaacagcagagcctacataaagctgtcccaacagcagagcctacataaagctgtcccaacagcagagcctacataaagctgtcccaacagcagagcctacataaagctgtcccaacagcagggcatacataaagctgtcccaacagcagagctttcttttcagcactatggagtgaatccttaccactgctacacctggctatcagcagagccttgtctagCATTTAACCAGTTCATTCAGcctaatttactgccttttaaaaaacatagctgatatggctgacttacttaggcaatccgtaatttcgattaagacattaatgagagagctaggacagacgtagtcaatataacaattTTTTCCAGACTTTTAAAATGTACAGCGACATAATTCataacatgggccattcttacagtattatccctgtacaccaagtcagaaccgaaggataaataaagggggcatataagcagacaatgaaagctcttacaatattttaattacatttctctaaaacaagcTATgagctacatgtgcaccaccaagtcagaacagtaggctaagttatgaaggggaaagggaccaaattattagggtgaggcacatgggctactaacagcttactacacaacacatttagtattactttcttagctaaagtacacatatctccctgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1786119 lncRNA downstream 29349 52317137 ~ 52318532 (-) True LOC110496488
TU1786124 lncRNA downstream 37348 52310308 ~ 52310533 (-) True G1561233
TU1786121 lncRNA downstream 40216 52307422 ~ 52307665 (-) True G1561230
TU1786116 lncRNA downstream 43030 52304345 ~ 52304851 (-) True G1561225
TU1786115 lncRNA downstream 44293 52303258 ~ 52303588 (-) True G1561224
TU1786134 lncRNA upstream 2425 52352728 ~ 52355011 (-) False LOC110496491
TU1786136 lncRNA upstream 5039 52355342 ~ 52355831 (-) False LOC110496491
TU1786139 lncRNA upstream 7191 52357494 ~ 52357912 (-) False LOC110496491
TU1786138 lncRNA upstream 9997 52360300 ~ 52396595 (-) True LOC110496491
TU1786203 lncRNA upstream 60743 52411046 ~ 52412380 (-) True G1561305
XM_021572420.2 mRNA downstream 16320 52317137 ~ 52331561 (-) False LOC110496488
XM_036953083.1 mRNA downstream 16352 52317137 ~ 52331529 (-) False LOC110496488
XR_005037333.1 mRNA downstream 66006 52271271 ~ 52281875 (-) True LOC110519830
XM_036953077.1 mRNA downstream 78563 52261367 ~ 52269318 (-) False sytl1
XM_036953080.1 mRNA downstream 78563 52261367 ~ 52269318 (-) True sytl1
XM_036951070.1 mRNA upstream 2422 52352725 ~ 52396978 (-) False LOC110496491
XM_036953130.1 mRNA upstream 48355 52398658 ~ 52428130 (-) False LOC110496493
XM_021572427.2 mRNA upstream 48744 52399047 ~ 52428128 (-) False LOC110496493
XM_021572428.2 mRNA upstream 48744 52399047 ~ 52428129 (-) True LOC110496493
XM_036953085.1 mRNA upstream 77922 52428225 ~ 52430909 (-) False sesn2
TU1786055 other downstream 97392 52249354 ~ 52250489 (-) True G1561167
TU1786046 other downstream 164674 52179320 ~ 52183207 (-) True trak1b
TU1785112 other downstream 892596 51382672 ~ 51455285 (-) False G1560339
TU1785000 other downstream 1133737 51213155 ~ 51214144 (-) True LOC110496463
TU1783839 other downstream 1697628 50635403 ~ 50650253 (-) True thsd7aa
TU1786137 other upstream 6449 52356752 ~ 52357310 (-) False LOC110496491
TU1786175 other upstream 294686 52644989 ~ 52647777 (-) True G1561279
TU1788031 other upstream 1248347 53598650 ~ 53602694 (-) True G1562762
TU1787983 other upstream 1271597 53621900 ~ 53628422 (-) False tomm7
TU1788090 other upstream 1402103 53752406 ~ 53752683 (-) True G1562816

Expression Profile