RNA id: TU1785814


Basic Information

Item Value
RNA id TU1785814
length 704
RNA type TUCP
GC content 0.45
exon number 2
gene id G1560957
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 52441146 ~ 52441941 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atcAGAACATGTATCTTTAAGACCAATCTTATATTAAATTAcctttatatatatattccatACAAAATAGATACCTTCGTATGGTGACAACaggggaaagaaagagatgagtgagagatgcagggagagacACATAACaacaaaatgatcaatggaacTGATGTCCTGTTCCACTGGGAATGACAAGACACAAGCTGCCTTTGGGGAAGACTATACATTGCGCACACACAGGCCGCCTTAAAGATAGGACCCTTCAGTGTTACAAACACCGGTTCCCTATGAGGGAAGACTTTTATTAACGCACACACAGGCTGCCTATGAGGGGGAGACTTTCAGAGGCAAAAGACAGAAGATGAGTTACCATGGTGACCGGTGCTCCATCTCCAGGAAACCCAGTGATGGACAAGgtgaggcagaaagagaggggtgCTAAAGAGAAATGGGGCGGGGGTCAAAGCTCAGAGGTCATAAACTCCTCTTCAGACTCAACAGGAAGTAAAAACAGGGTGTGTGTTGTGGGGGGAGTttggggtatgtgtgtgtatcctcAGACAATCTTGTTCTCCAGTGCAGCGATCCTCTTCGACACGCCCTCCAGTTTTTTCGTTAGTGCCTGTAAGGCTTCTTCTACTTTTTTCTGGAACTTAACGACAGAGTCACATTCACATGGGTCTTCCTCTGTAAAGACAGACAGCATAAAGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1785803 lncRNA upstream 8698 52428242 ~ 52432448 (+) True G1560947
TU1785800 lncRNA upstream 9007 52428242 ~ 52432139 (+) False G1560947
TU1785801 lncRNA upstream 9007 52428242 ~ 52432139 (+) False G1560947
TU1785708 lncRNA upstream 38860 52400584 ~ 52402286 (+) True G1560870
TU1785715 lncRNA upstream 109514 52322382 ~ 52331632 (+) True G1560876
TU1785780 lncRNA downstream 31290 52473231 ~ 52474079 (+) False G1560932
TU1785781 lncRNA downstream 31290 52473231 ~ 52474079 (+) False G1560932
TU1785783 lncRNA downstream 31290 52473231 ~ 52474079 (+) True G1560932
TU1785776 lncRNA downstream 32337 52474278 ~ 52477907 (+) True G1560930
TU1785841 lncRNA downstream 39638 52481579 ~ 52484772 (+) True G1560981
XR_002469561.2 mRNA upstream 95478 52340281 ~ 52345668 (+) True LOC110496490
XM_021572419.2 mRNA upstream 143926 52294668 ~ 52297220 (+) False LOC110496487
XM_021572415.2 mRNA upstream 195702 52235397 ~ 52245444 (+) True si:dkey-166k12.1
NM_001124611.1 mRNA upstream 280392 52155121 ~ 52160754 (+) True cck-n
XM_036953074.1 mRNA upstream 357676 52036488 ~ 52083470 (+) False LOC110496482
XM_036953148.1 mRNA downstream 121589 52563530 ~ 52570280 (+) False zcchc17
XM_036953149.1 mRNA downstream 121912 52563853 ~ 52570280 (+) False zcchc17
XM_036953150.1 mRNA downstream 121956 52563897 ~ 52570280 (+) True zcchc17
XM_036953152.1 mRNA downstream 158444 52600385 ~ 52606655 (+) True dclk3
XM_036953158.1 mRNA downstream 199296 52641237 ~ 52644819 (+) False cyhr1
TU1785750 other upstream 85311 52355297 ~ 52355835 (+) True G1560911
TU1785643 other upstream 183616 52256636 ~ 52257530 (+) True G1560811
TU1784684 other upstream 367117 52066842 ~ 52074029 (+) True LOC110496482
TU1783680 other upstream 1805580 50633743 ~ 50635566 (+) True G1559041
TU1782980 other upstream 2221019 50219754 ~ 50220127 (+) True G1558443
TU1786576 other downstream 733781 53175722 ~ 53178937 (+) True snrpd1
TU1786545 other downstream 835849 53277790 ~ 53288465 (+) True G1561544
TU1786840 other downstream 1276428 53718369 ~ 53719476 (+) False LOC110514975
TU1786837 other downstream 1278377 53720318 ~ 53724664 (+) False LOC110514975
TU1786912 other downstream 1375223 53817164 ~ 53840871 (+) False G1561845

Expression Profile