RNA id: TU1785942


Basic Information

Item Value
RNA id TU1785942
length 382
lncRNA type antisense_over
GC content 0.57
exon number 2
gene id G1561068
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 52759813 ~ 52760263 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGGCAGGTAAGACAAGGGGCTGGGATGGGTCACTATGATGGTGACTGGATGTGTCATCAAGATGAAACCAGGCAGGTAAGACAAGGGGCTGGGATGGGTCACTATGATAATGACTGGATGTGTACTCACCGACAGACAGGCGTGTAGGGGAGGAGTCTCGTGAGCAGCCCTGGCTGCGGGGGATGCGGCTACGTCTCCCTCCAGCCCCAGCTAGGACCCTCTGGGCTCCAGAACCCAGAGTACTCAGAGCGGTACTGGTCAGGACGCGACCCGGAGAACCACTCCGACTGCCGGctagagagagcgggagggaagAGAGTTAGAGACGCACACATAGACCACACACTTGTCATGCGTGGGACCCTATTGTCTAAGgaataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1785883 lncRNA upstream 8890 52746296 ~ 52750923 (+) True G1561019
TU1785935 lncRNA upstream 72655 52686648 ~ 52687158 (+) True G1561062
TU1785930 lncRNA upstream 87078 52672425 ~ 52672735 (+) True G1561059
TU1785864 lncRNA upstream 112036 52644987 ~ 52647777 (+) True G1561004
TU1785865 lncRNA upstream 112832 52644960 ~ 52646981 (+) False G1561004
TU1786003 lncRNA downstream 59551 52819814 ~ 52820364 (+) True G1561125
TU1786336 lncRNA downstream 65507 52825770 ~ 52826047 (+) True G1561420
TU1786337 lncRNA downstream 65952 52826215 ~ 52826631 (+) True G1561421
TU1786342 lncRNA downstream 66876 52827139 ~ 52842388 (+) False G1561422
TU1786353 lncRNA downstream 67899 52828162 ~ 52838636 (+) False G1561422
XM_036953158.1 mRNA upstream 114994 52641237 ~ 52644819 (+) False cyhr1
XM_036953159.1 mRNA upstream 114994 52641240 ~ 52644819 (+) True cyhr1
XM_036953152.1 mRNA upstream 153158 52600385 ~ 52606655 (+) True dclk3
XM_036953149.1 mRNA upstream 189533 52563853 ~ 52570280 (+) False zcchc17
XM_021572444.2 mRNA downstream 102417 52862680 ~ 52892459 (+) True susd5
XM_021572445.2 mRNA downstream 146136 52906399 ~ 52918381 (+) True fkbp9
XM_021572454.2 mRNA downstream 265153 53025416 ~ 53051271 (+) False si:ch211-199g17.2
XM_036953231.1 mRNA downstream 282955 53043218 ~ 53051271 (+) False si:ch211-199g17.2
XM_036953236.1 mRNA downstream 282955 53043218 ~ 53051271 (+) False si:ch211-199g17.2
TU1785814 other upstream 317872 52441146 ~ 52441941 (+) False G1560957
TU1785750 other upstream 403978 52355297 ~ 52355835 (+) True G1560911
TU1785643 other upstream 502283 52256636 ~ 52257530 (+) True G1560811
TU1784684 other upstream 685784 52066842 ~ 52074029 (+) True LOC110496482
TU1783680 other upstream 2124247 50633743 ~ 50635566 (+) True G1559041
TU1786576 other downstream 415459 53175722 ~ 53178937 (+) True snrpd1
TU1786545 other downstream 517527 53277790 ~ 53288465 (+) True G1561544
TU1786840 other downstream 958106 53718369 ~ 53719476 (+) False LOC110514975
TU1786837 other downstream 960055 53720318 ~ 53724664 (+) False LOC110514975
TU1786912 other downstream 1056901 53817164 ~ 53840871 (+) False G1561845

Expression Profile