RNA id: TU1787610


Basic Information

Item Value
RNA id TU1787610
length 2654
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G1562427
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 52827050 ~ 52831250 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTCGCCAACATTATCCTCCTCTTCCAGACCCCTCCTCTCCAACATTATCCTCCCCTTCCAGACCCCTCCTCTCCAACATTACCCTCCCCTTCcagacctctcctctccaacaCTTGGACTAGAGGATGAGGGGGGACGATCCTAAAGAGGCAGAAGTCTACAACCCACAAAATGGTGGACAGTGTTATTCAGGAAGGTGCAATGGTACAGAACTTGCACATAGGAGTACAGACGTGACAACGAGCATTGGTAATCATGTCAACTCCATACGTTACAATTCTATCTGCCAAGTTTGAACCGTTTTGCCCTTCTAACCACACATCTGGACAACGCATCACTCTGGGTGGACTTCATCTCAACCAATCACACGCCACCTCTGTGTGACCGTGCTGTAAGTCAACTTGCTTCGACCACTGGACACCCAGCCTGTGAACGCCAAAAGGAGGATTCTGGCAAGTGTAGTGATTCTGGGTGTGAGCAGAGAGGATGCTGGGATAGCTCTCTGAGACTCGGATCTACGGAGGGGACACCACTAAACCCCGCCCATCCAGGTGCAAACTGAAAACCAGTACAAAACTGGAAgtacaaaactgaacatttgatGTTTTTTCTGAGAACTTGCCATTTGAGACTCAGTTTTTGTTTGTAAAGAGAATGTTTtgcaatgatggcaaaaaaagaATTACAATATGGCAACTCCCCTTCGGATTGGAGTTGGCCagtaacacatttttattttccctCTTTTTTTCCAGTGCTTATTGTAATTGTCCATGCTTGTCTATCCAGAGAGGGAGATTAGATCTGTGTATCTCTCCTTTTGAAAATAATGAAAGCAAACTGTTACCGTTGGACAGAAATGGACTGTCTCTGTCAGAAGCACAGCATCTGATGACATCAAGTTGTTTTTGTATGCTACATCACTGGAACATGTGTACTCAGGGCCTCTTGTGCACTGTGTGACTGTGGAACACACAGGCCTGGTTCCAAGCTGACCACTAGCCTCTTGTGCACTGTGTGACTGTGGAACACACAGGCCTGGTTCCAAGCTGACCACTAGCCTCTTGTGCACTGTGTGACTGTGGAACACACAGGCCTGGTTCCAAGCTGACCACTAGCCTCTTGTGCACTGTGTGACTGTGGAACACACAGGCCTGGTTCCAAGCTGACCACTAGCCTCTTGTGCACTGTGTGACTGTGGAACACACAGGCCTGGTTCCAAGCTGACCACTAGCCTCTTGTGCACTGTGTGACTGTGGAACACACAGGCCTGGTTCCAAGCTGACCACTAGCCTCTTGTGCACTGTGTGACTGTGGAACACACAGGCCTGGTTCCAAGCTGACCACTAGCCTCTTGTGCACTGTGTGACTGTGGAACACACAGGCCTGGTTCCAAGCTGACCACTAGCCTCTTGACCACTGAGCAACTCCTGAGTCCCCCTCAAAGAAATGAAAGCCAGAGGTTTGAGCCTAAGTGACGATCATGCgtcttaaaaaataaatacatctggagcagtggaaacaagcAACGTGGCAGATACTTCACACAGTCTACAAGATGGAGATCGAGGGCAAGGTTACGGTTAATTCCACCCTATTTTCAGATGTTCAAGGGAGAGTTAAGAAGTGATTACCAGAAGTGGGCCTTGATCAATTTGAGGGCGAGGTATAGCTATGTTACTGCTATGTTACCTACCATGAGCGTTCTTATCCACGGCGTCCCCGGGGATAAAGGGTCAGGGCTAGgggccagtggtgggtttgggatgaggcctgtgtgtgtgtgtaaagcctcagacagacagaggtgtaTCGTATATAATATGAGTGTTTGACTTAGATGCTGCTGGTGCTGAGTTGTGAAGCTGACTGACCTCCAGGGTTGGAGTCAATTCAAAAATGGAATTGATCCCAGCCCTGCTGACCTCACTACATGGCAGTGATACTAACAGCCTCACTTTGACAGATGGTCTAACAGGAGTTTTATGTTgaagaaaataaataatgaataaataaacaTAACATAAATAAAAGTAACTGATAGTAAATGTGCTCTGACTATCTCTACAGTGAAatttgttcgtgtgtgtgtgaaatCCTCACCCTGACCAGCAGATGTCGCTGGCGAGCCGTGTAGGTTGATCAAGGGTTGAGATGCTCGCCCAAATCTGGACACCCATCAACAACATCTTATATATTCTCCATGTGCAGGTCATTTTACTTTGAGAAAATATAAGTATGATTATTTTCATCCAAGCTGCAGTAAGGATCAAATGTGTTAAAACCTCCAACTTCCATATATTTCCTTTTTAAAATTAGATTATGGGTTTAATATCCTTTACCAGTAAGTGGAAAAATTATCAACTGTAAAATGATTACTTTAGGGATAGACCTATGGGATAGACCTACCACAATCTGACCATCTCTATGAAATAGCCCTCAGCAGCAGTGATATTACCGTAGTATCCACATTCAGATAAAGTGATGGAGAGGTTGTTACTTAGCTTGCTCTGGCATGGAGCATATTGAAAAGATGTTCTACTTCCCTCCTCAAATAAGATTCAACTTTTATAAAACTATTCATATTTTTCGTTTCTGTCCAGATATTGCAAGTAATTCGTGATGTCTTCTCACTTGTGAATAAGTAACGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1786309 lncRNA downstream 47753 52779382 ~ 52779744 (-) True G1561396
TU1786184 lncRNA downstream 87488 52675749 ~ 52740009 (-) True G1561288
TU1786280 lncRNA downstream 152327 52674950 ~ 52675170 (-) True G1561378
TU1786277 lncRNA downstream 155416 52671757 ~ 52672081 (-) True G1561375
TU1786271 lncRNA downstream 171355 52654774 ~ 52656142 (-) True G1561369
TU1787669 lncRNA upstream 76338 52906692 ~ 52918374 (-) True G1562451
TU1787653 lncRNA upstream 166302 52996656 ~ 53051278 (-) False G1562450
TU1787664 lncRNA upstream 174063 53004417 ~ 53084936 (-) False G1562450
TU1787685 lncRNA upstream 206034 53036388 ~ 53039622 (-) True G1562458
TU1787647 lncRNA upstream 207866 53038220 ~ 53051278 (-) False G1562450
XM_036953202.1 mRNA downstream 2525 52734993 ~ 52824972 (-) True clasp2
XM_036953179.1 mRNA downstream 2531 52731509 ~ 52824966 (-) False clasp2
XM_021572442.2 mRNA upstream 7910 52838264 ~ 52858740 (-) False fbxl2
XM_021572443.2 mRNA upstream 7910 52838264 ~ 52858741 (-) True fbxl2
XM_036953228.1 mRNA upstream 70317 52900671 ~ 52905814 (-) True LOC110496507
XM_036953216.1 mRNA upstream 88330 52918684 ~ 53013656 (-) False LOC110496850
XM_036953218.1 mRNA upstream 88330 52918684 ~ 53013656 (-) False LOC110496850
TU1786175 other downstream 179720 52644989 ~ 52647777 (-) True G1561279
TU1786137 other downstream 470187 52356752 ~ 52357310 (-) False LOC110496491
TU1786055 other downstream 577008 52249354 ~ 52250489 (-) True G1561167
TU1786046 other downstream 644290 52179320 ~ 52183207 (-) True trak1b
TU1785112 other downstream 1372212 51382672 ~ 51455285 (-) False G1560339
TU1788031 other upstream 768296 53598650 ~ 53602694 (-) True G1562762
TU1787983 other upstream 791546 53621900 ~ 53628422 (-) False tomm7
TU1788090 other upstream 922052 53752406 ~ 53752683 (-) True G1562816
TU1788103 other upstream 1044056 53874410 ~ 53875592 (-) True G1562828
TU1788095 other upstream 1059355 53889709 ~ 53894949 (-) True mrpl3

Expression Profile