RNA id: TU1787648


Basic Information

Item Value
RNA id TU1787648
length 9231
lncRNA type antisense_over
GC content 0.47
exon number 3
gene id G1562450
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 52996656 ~ 53084936 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATAATGTTATGGAAGATATTAGTAGATCAGTGTTTTGTTTCCCAACCCTCTAAGGGTTTTCCAAGGTCAGAAATTCATAAGATCAAAAAACAGGCGTTACTACAGAATGACAATGACTTCATGTAAGATTTGGTTTGTTtttggtaaaaaataataaattggGAGCCACTGCATTAGATGACTGGAGCAGGAGATCAATGGATACTGTGACTTTATTAGCCTGAAGGCCATAATGTACTCAAATACAGCAGCAAATAAGAAAATAAACTACAGTATGAGACACTTGAATACAGCATTAAGTGACTCAATGgaaaaacaggtaaaaaaaaaacttgactCCAGCTGTGCTACATTAACCATTTTATAGACCTGCTTGAAAAGTTTGATCATGCTGATCATGatttcccccctcctcctcctcaggtgGAGAACATCTTGCCGTTTCAAAGGTAATATCCTGGAATTCTACACAGTTCACCATGAGGTGGAGAGGACATGTTTCagttacacattttgtcatgacttatgccatgttcatattatacactatatgaccaaaagtatgtggacacctgctcgtcaaacatctcattccaaaatcaggggtattaatatggagttggtcccccctttgctgctataatagcctccactcttctgggaaggcattccactagatgttggaacattgctgcggagacttgcTACCAGTTGGGTGATTAGGTCTGGCGtaccaattcattccaaaggtgttcgatggggttgaggtcagggctctgtgcaggccaatcaagttcttccaaaccatttctgtatggaccttgctttgtgcacaggggcattgtcatgttcaaacaggaaaggaccttccccaaactgttgccacgaagttggaagcacatgatcatctagaatgtcattgtatgctgtagtgttaaggtttcccttcactggaactaaggggcctagcccgaaccatgtaaaaaacagccccaggccattattccCCCACCACCAAACTTGACACTaagcattggggcaggtagcattctcctgtcatccgctaaacccagattcgtccatcggactgccagatggtgaatcacgcttcaccactcCAGAAAAACGCATTTTcaatgctccagagtccaattgcggcgagctttacaccactccagacgacgcttggtattgcacatggtgatcttaggcttgtgtgcgtgcggctgctcggccatggaaacccatttaatgacgCTCCCGCCAAACAGTTTGTGCGGACAttccttccagaggcagtttggaactcagtagtgagtgttgcaacagggGACAGACAATCTTTACGCTctacagcactcggcggtcccgttctgtgagcttgtgtggcctaccacttcgcagccgAGCTGTTGTTTCtccaagacgtttccacttcacaataacagcaattaCAGTTGACCGAGTAGCTCtagacaaactgacttgttggagaaTGTGGAACTCTTATGACAGTGCCCCGCTGAAagtaactgagctcttcagtaaggccattctactgtgaatgtttgtctatggagattgaatggctgtgtgctcgattttaaacctgtcagcaacaggtgtggctgaaatatccagATCCACATatacttttgtgtgtgtatagtgtctgtAAAAGAGTGACAAAATTACAAAAATCAATGGAGgcccccctggaggtcagggcccctggctCAACTACCTTACCTAGCAATCTTAAAATGTTTTGCTGACATGGGCTCATTGAGCGACTGTCATAAGTGGGAAACTGCTGATACACAACAAAATGTCAAAATTgcacctggtgtattctactTTTCAAAAGTGAGTTGAGACCCGACAGTTCCTTGAAAAAGAAAAGGGCAGCGCGTAGTCTGACTATAGGAAGAGGCGAATCCAAGTCAGTTGTACCTGCTGCACAAACATTTTTGGGGAATAATCTTCAAATTAACACTAATAATTCAACAAATGGAATCAAATCTACTCAATTAAGCCAATGTAAAGGTGTGTGAACCAAAGTCAAAATATAACACTGGCCACAGCTGTTGTCACACTGAAATAAACCCAACTTAATGAGGGGAGCACACATGGCAAGTATgaaaaacatttgaaaataatACTGTTTATTTTAACAAGTGTTGTGTTTCTGAACCTCATTTTAAACAACTTATTCAGCTCTGCTTCCCTCAGCTGGTTGAACTGAAAACGAATACAGCGCCTCCTTCTAGACAGTTCTGGAAAGGTCAATGTTGAACCCCTAATTGATCCCCTTATTGTGTAAAATAAACCCTAGGTTAtatttacatttagatttttttttcattAACCAAAATATTTGTTGTTGAAAAATAGATTTCCCTTCTTCATAATGTCTCTAATTGGTCGCTGAAGCAGCGTTTCACAAACTGAGTTCATAATATTATAAAATTTAGCCAGTGTTCAACGTGTTGTCTATTTATCCATCTCAGCTCCATCTTGACTCGACGGCAGGAGACAAACAACTTAAAACAAACAAGTCTTGTATAAATCTGAATTGGTAACAGAATTGAACCGGTGAGTTGAATCGTTGACAGTTGTCAATGAGATTTCATGACATCATACAGGGGAAGTACCTAAAAATCAGCACTTATACAATGGATGGGATACTGTTGGTTTAAGACAGCTATAAAAACAATAGAACCTAAAGTGTATAAAACACACAAAACACCTGTCCATCTAAAACAACAGTGTCTAAATTGCCACAAATAACTATCCTGGTGGATTTATGTATGGTGTGTGGTAATTAGACCCAGGGAGGTCCTGGTCCTGGAGCTGCCCAGGGACTCCGGGCAGGGCTGTGGCCCAAGTAGGCTCCTCTGTAGTGGGGAGGGCTGGGAGGTAAGGCTGGGCCGTGCCGGGGGGACAGAAAGCCTTCATGTCCTGGAAAGAAGGGCTGAGGGTGGCAGGGTCTAGACACCATAACAAATGGGGGGCTGGGGAGCCTTCTGTACTCCTGTGACTGCACACCCCTCATCTTCATGGGGAAGGGACCAGAGTGGGGATTGGGTCCAATCCCCTGGGGCATTGTATTGTGGGGGTACGGTAGGACCTGGGGTGTAAACTCGTCAGGGTTAGAGTGAACGAAGTGCGGGCCAGGGTTGGTTCTAAACCAATCAGAAACCACTTGGTAGGGGTCACAGTTTATTCTGTGGCCCTCTGGGAATGGCAAGTAGGAGCCAGGGTCAGTCTCATACTCCTGCAGACCTGATCTAGAGGTGTCAGGGGTCAGCTGTGTGCCTCCATAGGCCCATGCTTCTCTGTACTCAGCCTCACATAACTGCACCTGCTGCATGGCTGCTATGTCACCCATACAACTGCTCATCTCTTCTCGGTGAAGGGCTGGCTCTGCCTGATCTCTATGAAGGGCTATGTCATGTCTGAGATCTGCTGTGTCAACCATATGAAGCCCTACGGCGCCCCTATGAGTTCCTGTGAACCCCTGCGCCTGGTGCCGTTGTGGAGGCTGGCCTTGCAAATACTGTTGGTGGTAAAAGTCTGagttctcctccctctctccatcctttccttcctctctctccccctcctccaccatgACCTCCACGATGAGCCCAACTCCATTCTGAATTTCAGCTCTGCAtcgctcctcttcctccatcaaCTGACGGTCAGTTAGCTCCTCTCCTGTAGCATACCAACGGTCAGTTGTCACTTCTGTTGTAAAAGACTGATTGTCAGTTGATCGTTCTCCTGTTTGGTACATTTTGTCAGTTGACTTGCTTCCTGTGGAAAACCCACGGTCTGTTATCCTCTCTCCAGTAGAGTACAGACTGTCAGTTGTCCTGTCATCCTCTGCAAGCCTCTGTGCCCCAGAATGACactcattccccctctcctcctcctgttcttctTCCATTAGAGGAGTGTCTGTCAAGCTCTCCTTCAAGAGACGGCCGGTAGTGAAGAGAATCGGCCCGGCAACAGACGCTGTGTCAGTGATGTCTCTGGCACAGGCTAGACCGGGGTAAATACTGCCTTGTCGGTTGTTCTGCCCCACTCGGACATGGAACTTTGTGTCAGTGAGTCGGTTATTTGCTGAATACAGATGGTCAGTTCGGTCCTGCTCTCTCCTGAGGTAAACCAGGTCAGTACTGTTTTGCTCTTTGACAGAGTAGAGATCGTCAGTTGTGTTTTTCTCTCTGCCATCGTACAAAGCATAGTCGGTGAACCTCTGTTCCCCTCCGAGATACAGACGGTCTTTCTCGGTGTCATCTCCCATAGTCAGCTGCTGATCAGGTATGGCTGGGCTCAGTCTCATAGTCGAAGTGTGTGCATGTCCCGGAGTGTGTCTATTTTCATGTGTGTTTCCGAGTCTTGCGGCAACTGAGTTTCCCGGCTGGCCAAGCAAACGTGAGGGAGCGGGAGAGGGTTGGAGTGAGGCATCTACGGTGGGGGAGTGAAGGGGTGAGGCGTGtctgagggaggagggggaggtttcCAGGCTGAAGGAGTTCCTCTCCAACAGCCAGGGGCCGTCCGTCATAGATAGACTGACCTTGAACACCGGCTCACAGCGAATCAACTTTGCAGGAACCCCCTGCAGTCCCGCCCCCTTCCCCTCAGGCCCGCCCAGAGATGTCTGACTTCCAGCTGTGACATTTGGGGTCGGGGAAAGAGAGGGGTCATGCTGCCATGATGAGGCAGGACGCTTCAGTGAAGCACCTTAAGTGAGAGACAAAAGGAGacgaagagagcgagggagagagaaagaggcaacgagagagagaaagacactcaCAAAGAAGAGTGATAAATGTTAGTAAAAAGTTAGATACATTTTTCTATaggcaaaataaagaaaacacaatgTGTGTAGCAGGGAATGATTCAGGGGACGTAAATCATAAAAAATGAATTAAAGGGCCAGTGCCGTCAAAAATGTGACTTTCCTGTGTTTTTATGTACATTTCCACACTAGGAGTTGGAATACTAATGTGAAAATTattataatgcccttttagtgcaagagctgtttgaaaagaccgcctgtcatttcagcctgttttggtggaatgtagttttggcctgcctggtgacatcaccatccggtaaattagttaatagaccaataagaaagagttccaaaccagtctgccaataacagctagttttcgttttttcccctcccccacttagaccactcccagacagtcctagcaaaatgactgctcttgcttgagaaattgctcttgccaagaagctatttttgtatatttttttcaattttgaTTGAAAACAAAATCACAggaaggtacttaattgttatccAGAAATTATTTGACATGGGGatgaaaacagctgcattggggcTTTAAACTAACTGTCAAAAGGTTATTTCCAACACAGTGGTACCCAATGTCTTTAACCACCCATTAACAAAATTGGCGCATCATCCCATGAGGTCATACACTCACCAACCAGTGGCTTGCTTCCATGGAgaaactcctcctcctccaacgaACTAAGCCGTGATTGGATAGAGACACTCTGCTGCAAGACAGGGGACTTCTCCAATTGGCTAGATGAGTTCCGACTCTGGGTGGTCGGACTCCTCCATAGGACGGTTCGGTTGTCAAGCTGGACAACAGGCCCCTCTGGTTGGACGGAGAGCCTTCGAGGCGATATCACGGTTCTCTGTGACTGGATGGTAAGATACTCCGACTGGACTGATTGCTTCACTGATTGGCTCTGAAGATCTCTCTGCTCCCTCCCAGTCCTGATGGCATGCAAGAGGAtgagagctggaggagagagagagagaacgatagaTCCGGGGGGGCGGACAGCGTGAGTGACGCCGACTGGTACAAAGAGAAAAAAAACTGATggatgaaggagaagagagaatatGGACTGACCATCACTTTCGCTGTGTGTTGTCATATCGTCATACATGGCAGCATCCAACTTCAGCACCTaacagaaagacaggacagaggagatttgcacgcacacacacatcaccccagcatgcacagacacacacatacctgtacgTCCCCggttccttctctcttctctagtATTTGAGCCATCTCCATAAGAGGCCGGGCCAGCTTGGACAGGTCAGGAGGACTCTGCTTCCACTCTGACACAAAGTGAGGGTGATGGACTTTCTATACAACGACAGCCACAAGAGAGAGGAAACACACAAGTGGTATACATGCAGCTGTATTAGGCTAGTTGTAGGTCAGTGATTGTGTAGAGCAGTGTTTCGCATTCCCCAACAGGGTGCGCATTTTTGTTTTTGTCCTAGCACTAAAAcaccagatttaaaaaaaatactcatCAAGCCTTTGATAAGAATGTGGTGTGTTAATTCTAGGGCACAAAAAAAATGCACCCCTTTGTGTCCCTGGGACCAGGATTGAGAAACCCTGGTGTAAAGAGGTGTGGTTTAACCGTACAGGTATTACAATAAGACATCAGAATCATTAAGTAGCTTGTGAGTAAAGAGCACAGATCCAGAAACACACATCCCACACTCACAATGTAGTTGTATCGGTGGAGACTCCCCATGATGTGGCTCCTGACATCAGCCTTACtgagacgacacacacacacctcacaggtACACCGCCTCAGAGTCCCTGCCGAGTgtcacacactctgtcacacagcCCAgacctaaaaacacacacacgtgaagTACACACAGGTCTAAAGTACACACATTGGTCTAAAACACAGTCGTATCATTTACAAAAACACAGAGTTGTTCCTGACCGATTATGGGCTGCAGTCTGTTCTTGTTGTTCAGATACACCCTAAGGGAGTTGGACAGCAGGCTCTGGCCACACACAGCTACATGAGGATGagagaatgaatgaatgacaatgaaaggaagaaagagaggatgtTGAGGAATGAATGAATGAGGATGAATAAAGAGCTGATAACCCATTGCCTACCATTGTGTGCTCCTCCAGGCTGCATAGTGGCAGACCTCAGGTGTCAAACACCCTAACAAccgagaaagagtgagagaaaaaagAGCGACAGagcagatggagaaagagagagggaggcagggggggaaACACTGTGTGCAAACACCACAAGGTGGCTCAACAACACCAGTCACTGCAAATACGGGGCTGCAAGGGACAGAAGCagatatcagctatgtttttttaataatATCGAGATAATGCATTATCTAGCTGCTATACCACACTCTACATCTGTCAGTTTGACTTTACAGCACCCATTTAAGTCAAGACTCAATCTCATTTTGCCATGCTCGATTGACAATTGGCATTGATCCCAATCAATTCCATAAAATAGACTCCTGCTCACGTTTAACGGTGCAATGTTTCACAATATCATATGTCACACAGTTTGACCATACAAATATATTGCCAAATCCATTCTTTACCAACACAATACTTGAAAATGAAGCCGACTATCAGTCTCACCATTCGTCTTTGTTGATGATGCACGAGCATGTGAAAGGTGATGTAGCTGATTGACTGGCGTCACCGAGGTGTGCTGATAAAAAGTCAAATATAACTCAACTACAGGACTCGATCTATATTTGCGAGATAGAAGAACATACAAATCCTTAATGTAGATATAATAATTCATCTCGGCAGGAACAGAGCGCAATGTGCTAAAATGGAAGAATAGGTCAGTAACAACTTGAATGTGGTCACTGGCCTGTCTAACCTGGCTAAAGCGTCAGCAATATTTTCTTCCAAATGGTTTAGCAAAACGAAAGTGGCTAGCCAAGAAACGAAACTGGAGTGTCAGGATAAAAACATTCGATAAGCTACCAAATCAAGGCTCGTATGAAAACTGAAGTATAAATGTCACTCTCGCCAAGCTATCGTTAACAATCAAATGTGTGCGAATGAAACTCCGACAGAACTTAAGTTACATTAAcgctagctagcaagcaactagctagccagcaagtAAAAAAAGTTATCCATATGGCTAATTAACGTATAACAATAGAATGACCTACCGGTCTGTACTCCACGTCAGGGGAAATGGTGTGTTTGATCTGTCTTTCTGAAATAAATTGTTAAAAGAGATTACTGACACGGATTATCAACTCGACGACCGCACTGCGTAAAGCATGAGGTTAGATACAGCGGGAGAAACTCAAGAGTGCGGAACCAAAGAGGGACgaacgccgttacagaatcacccaccacaccaggaccaagcagcgtggtgacaggcagcgacAGCAGAAGCAACAaagagaggaatggacatgggaggatgaaTTGTTCGGAGAAGGACCCTGGgatcagcctggagaatatcgccgccccaaagaagaactggaggcggcgagaGCTGAGAGGCGTTGGTATGAGGAGAAGcaacagcggcagcaggagcaacaaTATCGGGACTACACtacttgggaggaaatagacaggtgggcggtcgacccagggagagtgccggagcccgcctgggattcgctggagcagtgcgaagagggttataggagaatggagttggagggaaaagcacggcggcgcggaaggaagcccgagagtcagccccaaaaatgtattgggggggggctcagggagagtgtggcagagtcaggagtcagacctgagccaactccccctgtttaccaTAAGGAGCCAGGGATGTTATCGGAGCTATCGGCGAAGCTGAGGGCTGAGTCTGAGAGGGTCGAGGAATTATTGGACAGAATGGAGGAGAGTGCAcggatgggagatgaggagacaCTCGAGGAGGTGTTAATagaattggaggagagtgaagagagagcagttgatttggcgtagtatgcaagatattcgcccgacggagcgtgtcggggatttgatggcacctgggtcagcgctccatactcgtcctgaggtgcgtgttagtcggctggtgaagattgtgccagcctcacgcaccaggcctcctgtgcacctccctagccttacacgtcctgtgccagccctgctctcaggctctccagtacgccttcacggtccggtccatcctgtgccaccttCACACACCagtcctccggtggcagctccccgcaccaggcttcctgtgcgtgtcctcggcccagtaccaccagttccagcaccatgcaccaggccttcagtgcgcctcgcctgttcagcgcagccagagcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1787669 lncRNA downstream 119846 52906692 ~ 52918374 (-) True G1562451
TU1787615 lncRNA downstream 206970 52827050 ~ 52831250 (-) False G1562427
TU1787610 lncRNA downstream 207866 52827497 ~ 52830354 (-) True G1562427
TU1786309 lncRNA downstream 258476 52779382 ~ 52779744 (-) True G1561396
TU1786184 lncRNA downstream 298211 52675749 ~ 52740009 (-) True G1561288
TU1787790 lncRNA upstream 46498 53097964 ~ 53098713 (-) True G1562554
TU1787803 lncRNA upstream 56518 53107984 ~ 53109769 (-) True G1562566
TU1787804 lncRNA upstream 60758 53112224 ~ 53115661 (-) True G1562567
TU1787805 lncRNA upstream 65076 53116542 ~ 53116769 (-) True G1562568
TU1787816 lncRNA upstream 90172 53141638 ~ 53146920 (-) False G1562576
XM_036953217.1 mRNA downstream 22922 52918684 ~ 53015298 (-) False LOC110496850
XM_036953219.1 mRNA downstream 22922 52918684 ~ 53015298 (-) False LOC110496850
XM_036953224.1 mRNA downstream 22922 52918684 ~ 53015298 (-) False LOC110496850
XM_036953225.1 mRNA downstream 22922 52918684 ~ 53015298 (-) True LOC110496850
XM_036953226.1 mRNA downstream 24564 52918684 ~ 53013656 (-) False LOC110496850
XM_021572461.2 mRNA upstream 131877 53183343 ~ 53187737 (-) True LOC110496514
XM_021572462.2 mRNA upstream 136609 53188075 ~ 53195009 (-) True mturn
XM_036953239.1 mRNA upstream 240947 53292413 ~ 53336840 (-) False LOC110496518
XM_036953240.1 mRNA upstream 240947 53292413 ~ 53350446 (-) False LOC110496518
XM_036953241.1 mRNA upstream 240947 53292413 ~ 53350447 (-) False LOC110496518
TU1786175 other downstream 390443 52644989 ~ 52647777 (-) True G1561279
TU1786137 other downstream 680910 52356752 ~ 52357310 (-) False LOC110496491
TU1786055 other downstream 787731 52249354 ~ 52250489 (-) True G1561167
TU1786046 other downstream 855013 52179320 ~ 52183207 (-) True trak1b
TU1785112 other downstream 1582935 51382672 ~ 51455285 (-) False G1560339
TU1788031 other upstream 547184 53598650 ~ 53602694 (-) True G1562762
TU1787983 other upstream 570434 53621900 ~ 53628422 (-) False tomm7
TU1788090 other upstream 700940 53752406 ~ 53752683 (-) True G1562816
TU1788103 other upstream 822944 53874410 ~ 53875592 (-) True G1562828
TU1788095 other upstream 838243 53889709 ~ 53894949 (-) True mrpl3

Expression Profile