RNA id: TU1787790


Basic Information

Item Value
RNA id TU1787790
length 552
lncRNA type intronic
GC content 0.39
exon number 2
gene id G1562554
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 53097964 ~ 53098713 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtagaatagtgaagacatcaaaactatgaaataacacatggaactctgccatttctgaggctggtaactctaatgaacgtatcctctgcagcagaggtaactctaatgaacttgtcctttgcagcagaggtacagtaactctaatgaacttatcctctgcagcagaggtaactctaatgaacttatcctctgcagcagaggtaactctaatgaacttatcctctgcagcagaggtaactctaatgaacttatcctctgcagcagaggtaactctaatgaacgtatcctctgcagcaaatcaaatcaaatcaaattttatttgtcacatacacatggttagcagatgttaatgcgagtgtagcgaaatgcttgtgcttctagttccgacaatgcagtaataaccaacaagtaatctaactaacaattccaaaactactgtcttgtacacagtgtgaggggataaagaatatgtacataaggatatatgaatgagtgatggtacagagcagcataggcagatacagtagatggtatcgagtacagtatatacat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1787664 lncRNA downstream 13028 53004417 ~ 53084936 (-) False G1562450
TU1787648 lncRNA downstream 46498 53038220 ~ 53051466 (-) True G1562450
TU1787653 lncRNA downstream 46686 52996656 ~ 53051278 (-) False G1562450
TU1787647 lncRNA downstream 46686 53038220 ~ 53051278 (-) False G1562450
TU1787685 lncRNA downstream 58342 53036388 ~ 53039622 (-) True G1562458
TU1787803 lncRNA upstream 9271 53107984 ~ 53109769 (-) True G1562566
TU1787804 lncRNA upstream 13511 53112224 ~ 53115661 (-) True G1562567
TU1787805 lncRNA upstream 17829 53116542 ~ 53116769 (-) True G1562568
TU1787816 lncRNA upstream 42925 53141638 ~ 53146920 (-) False G1562576
TU1787817 lncRNA upstream 42925 53141638 ~ 53143187 (-) True G1562576
XM_036953217.1 mRNA downstream 82666 52918684 ~ 53015298 (-) False LOC110496850
XM_036953219.1 mRNA downstream 82666 52918684 ~ 53015298 (-) False LOC110496850
XM_036953224.1 mRNA downstream 82666 52918684 ~ 53015298 (-) False LOC110496850
XM_036953225.1 mRNA downstream 82666 52918684 ~ 53015298 (-) True LOC110496850
XM_036953226.1 mRNA downstream 84308 52918684 ~ 53013656 (-) False LOC110496850
XM_021572461.2 mRNA upstream 84630 53183343 ~ 53187737 (-) True LOC110496514
XM_021572462.2 mRNA upstream 89362 53188075 ~ 53195009 (-) True mturn
XM_036953239.1 mRNA upstream 193700 53292413 ~ 53336840 (-) False LOC110496518
XM_036953240.1 mRNA upstream 193700 53292413 ~ 53350446 (-) False LOC110496518
XM_036953241.1 mRNA upstream 193700 53292413 ~ 53350447 (-) False LOC110496518
TU1786175 other downstream 450187 52644989 ~ 52647777 (-) True G1561279
TU1786137 other downstream 740654 52356752 ~ 52357310 (-) False LOC110496491
TU1786055 other downstream 847475 52249354 ~ 52250489 (-) True G1561167
TU1786046 other downstream 914757 52179320 ~ 52183207 (-) True trak1b
TU1785112 other downstream 1642679 51382672 ~ 51455285 (-) False G1560339
TU1788031 other upstream 499937 53598650 ~ 53602694 (-) True G1562762
TU1787983 other upstream 523187 53621900 ~ 53628422 (-) False tomm7
TU1788090 other upstream 653693 53752406 ~ 53752683 (-) True G1562816
TU1788103 other upstream 775697 53874410 ~ 53875592 (-) True G1562828
TU1788095 other upstream 790996 53889709 ~ 53894949 (-) True mrpl3

Expression Profile