RNA id: TU1787804


Basic Information

Item Value
RNA id TU1787804
length 2980
lncRNA type inter_gene
GC content 0.41
exon number 5
gene id G1562567
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 53112224 ~ 53115661 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acaggaacaatcacccaccaaacactcaaagaatatggctgcctaaatatggttcccaatcagagacaacgataaacacctgtctctgattgagaaccacttcaggcaaccatagacttttctagataaccccactataccacaatcccaatacctaccaaaaccccaagacaaaacacaccacataattaacccatgtcacaccctggcctgaccaaaataataaagaaaacacaaaatactaagaccagggcgtgacaccttcCTAGATGTGTTTATCTAGGGAAGAGACCCGTTTGAGTTTTAAATAGTTGAAGGACAAGTAGTGCCCGGTGGCCTTGATAACAACCACAGCAGGGATATATTGACAAGGTTAACACCGGAATACGgtggccaacacacacacactaactgttGGGCTAAATGAGTACAAGACAAGGAAGCCTGATATCCTTATATAAAAGGGATAGGTAGGGGAGACCTggtgacagactgacagtacACACAACTCACACAGTTTAGTTTACAGGAGCAGCGCAGCAGTCAACATGCGCGACACAGCTAAACTAACTGCGAGAAGGATATTAGAGACAGTGCATGGTCTGACTTACGGTTTTATATGTCCTCCCACGCTGTCACGTCACCTGCGTGATTTAGTTGTTATTATTACTCGACCTGCGCTGAGTGCGAGGGATATAATCCATACTTTAAACTGTACTGACAGTCTGAAAGGTATgaagtagaacacacacactactactaccagtagATGGCAGTACTTTTCATATTTAATGCTAGCTGGATGTTGCTCTGAAATGttttgtgtgtatacagtatcatTGTTTGGCTGTGTTGAGTTTGTTAGCCTTTATACTCTGGGGCCCAGGACAGCTTGGCTGCTGTGGCTGGTGTGTTTTACACCCTAATACACTATATCATACCATTCAGTCAGTGAATCTAAGTCAGCACTCCCAAAGACACAGTAcgctcacacagacacatacacacacaccagtcagtGTCAGCTTTAGTCACATAAGACTTTATTACAATATGTTTTTTTGTTAAACATGACATCATAAAATACAATAGAGTTGTAAAAGAAAACATTTCCCTACTGTGCAAAATCCCTTTAATTCTGATATTCTGATTGTCTTACTACAGTCATTAATCATGTTAATAAAAAATGACACGACGTTATTTAACAGCCTGGTGATAGGCTATCATTTGTCACTTGTTACAGTATCAACAACAAACCCTTTTTATCTATACCAATATTTACACATTCCCTTATCGGTGTTGTAGAACTCGAGACCATCTCGCagtgtctgctttccaccagacactgcaagatgaattcacctttcagcaggacaataacctaaaaccgaaggtcaaatctacactggagttgcttaccaagaagatagtGAATGTTCCTCGAGTCCATTCTCgagaccacatattgagtgtctcgGTCTTGTCTTGTACTCACTCTTGACTCTGTctcagacagtgaggtatcaaaATGTCTTCCCGAGACCAGCAGAGTAAAAAAATGAATAATTATCAGCTCCCATTCAGAAAACCACTTAGCCAGGTCAAATATCTTAACAGCCTTTATACCTGTTATAGACATGTTGcgcagtggtgaacctatagatcttcagtatgtaacaggttagtacagtggtgaacctataggtcttcagtatgtgacaggttagtacagtggtgaacctataggtcttcagtatgtgacaggttagtacagtggtgaacctataggtcttcagtgtgtgacagtggtgaacctatagatcttcagtatgtgacaggttagtacagtggtgaacctatagatctTCAGTATGtcagtacagtggtgaacctataggccttcagtgtgtgacaagTTCGTGATTCTGAAAGGACCGTAATACCAGAGCACTAATGTAGGAGACTAcactttttgtaaaacacaaaggGCCAGTGGTCTAGTTGAGGGTATACGCAGGTATAAGCCATATACCCACTTTTGTTTTAGTGGGCATTGCTTGTACTCTTAATCCCTACTGAtgtgtatcaaagtagtgtagtggaggtgtacGACTTATCAATTATGTAGTATAATagagaaatcatgcacaaagtagcctacacaatcgCAAAGCGCGTGAAATACAGTCACATGCGTTCCACACACATAGCCTAGTTTCAGCTGAATATTATCTGCAGGCAGCAAGAGTGTGCAGCTCTCAACTAGTTTTGACATCCATAGCCGGCAGGGTAGGAGACATTTTAACTTAtgatatctaccagtaaatgATAACTAAGTTAACAATGGGTACGCAAACCAGGTATTGAAAAAGTTAAGTCCTTATTGTTGGTTAGAAGGCTATTTGTCATCATGTGCTGCATCCGGGGTGTAGACATGGATGGGCCTGGGTGGACAGAGGCCCACCCACTGTGGAGCCaggccctgacaggcccaccTAATCAGATTGATGTGGTTTTAGCATTGTTGTGGCCTTAGACCGTCACAATTTGGtattttttctttaaaaaaaaagtgtgattttgagagtgaaCATCTGAAAATGTATTTTCACACAGGGaagacagcagtcccacacagcatgatgttaaaggataagcagtccataAACTCAGACATAATAAGCCAGTTGGTCCCAAtcataagaatacaaaaacacaaccataAGGCATTTCCcaatcaaaatgtacaagtattacttcccattgcaaaaaACATTTCACGTTTAGCAAACAAAGTAACCGGTGACCTAAAGTTAAAAGTGAAAAGGACAGCGTTTTaactagggatgcacaatatatcggtgaacatatcggaatcggacgatattagcaaAAAATGGCAACATCGGTGTCGCCCGATATCTAGTTTAATGGTGATGTTAAAAACCAGTGTCAAAGCTACCGTGCATACTTATATAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1787803 lncRNA downstream 2455 53107984 ~ 53109769 (-) True G1562566
TU1787790 lncRNA downstream 13511 53097964 ~ 53098713 (-) True G1562554
TU1787664 lncRNA downstream 27288 53004417 ~ 53084936 (-) False G1562450
TU1787805 lncRNA upstream 881 53116542 ~ 53116769 (-) True G1562568
TU1787816 lncRNA upstream 25977 53141638 ~ 53146920 (-) False G1562576
TU1787817 lncRNA upstream 25977 53141638 ~ 53143187 (-) True G1562576
TU1787758 lncRNA upstream 60047 53175708 ~ 53178935 (-) True G1562522
TU1787751 lncRNA upstream 163840 53279501 ~ 53288523 (-) False G1562519
XM_036953217.1 mRNA downstream 96926 52918684 ~ 53015298 (-) False LOC110496850
XM_036953219.1 mRNA downstream 96926 52918684 ~ 53015298 (-) False LOC110496850
XM_036953224.1 mRNA downstream 96926 52918684 ~ 53015298 (-) False LOC110496850
XM_036953225.1 mRNA downstream 96926 52918684 ~ 53015298 (-) True LOC110496850
XM_036953226.1 mRNA downstream 98568 52918684 ~ 53013656 (-) False LOC110496850
XM_021572461.2 mRNA upstream 67682 53183343 ~ 53187737 (-) True LOC110496514
XM_021572462.2 mRNA upstream 72414 53188075 ~ 53195009 (-) True mturn
XM_036953239.1 mRNA upstream 176752 53292413 ~ 53336840 (-) False LOC110496518
XM_036953240.1 mRNA upstream 176752 53292413 ~ 53350446 (-) False LOC110496518
XM_036953241.1 mRNA upstream 176752 53292413 ~ 53350447 (-) False LOC110496518
TU1786175 other downstream 464447 52644989 ~ 52647777 (-) True G1561279
TU1786137 other downstream 754914 52356752 ~ 52357310 (-) False LOC110496491
TU1786055 other downstream 861735 52249354 ~ 52250489 (-) True G1561167
TU1786046 other downstream 929017 52179320 ~ 52183207 (-) True trak1b
TU1785112 other downstream 1656939 51382672 ~ 51455285 (-) False G1560339
TU1788031 other upstream 482989 53598650 ~ 53602694 (-) True G1562762
TU1787983 other upstream 506239 53621900 ~ 53628422 (-) False tomm7
TU1788090 other upstream 636745 53752406 ~ 53752683 (-) True G1562816
TU1788103 other upstream 758749 53874410 ~ 53875592 (-) True G1562828
TU1788095 other upstream 774048 53889709 ~ 53894949 (-) True mrpl3

Expression Profile