RNA id: TU1787752


Basic Information

Item Value
RNA id TU1787752
length 488
lncRNA type read_through
GC content 0.59
exon number 2
gene id G1562519
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 53279501 ~ 53288523 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctccccctgtcctccgGGCTCTCCCTGCCCCTTTGCCTCACcctgtcctcctgtctccccctgcccCTTTGCCTGCTTCTGTGTTGCCAGCCAGTCACTGTCCAGTACAGGTATCCTCAACACCAGCAGCTTCCCCTCCTCTGGCTCCCCAGGGTGGTGGAAGGCGTGGTGATAGATGGAAGTACTAGGGGTGTAGATGCCGCTGCCCGTCATAGCCTTGCTGTCATGCCTGAGGTTAGCCAGTCACTGTCCAGTACAGGTATCCTCAACACCAGCAGCTTCCCCTCCTCTGGCTCCCCGGGGTGGTGGAAGGCGTGGTGATAGATGGAAGTACTAGGGGTGTAGATGCCGCTGCCCGTCATAGCCTTGCTGTCATGCCTGAGGTTAGCCGCCAGCAGAGTGACGTTAGCTCCCAGACTGACCGCTCTCTGGATCTGAACTGCTGTTAGTAGAGGAAGCAGATTCATCCAGGCTGTGGGGAAGATCAT

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1787758 lncRNA downstream 100566 53175708 ~ 53178935 (-) True G1562522
TU1787816 lncRNA downstream 132581 53141638 ~ 53146920 (-) False G1562576
TU1787817 lncRNA downstream 136314 53141638 ~ 53143187 (-) True G1562576
TU1787805 lncRNA downstream 162732 53116542 ~ 53116769 (-) True G1562568
TU1787804 lncRNA downstream 163840 53112224 ~ 53115661 (-) True G1562567
TU1787867 lncRNA upstream 43251 53331774 ~ 53339630 (-) True G1562623
TU1787875 lncRNA upstream 65218 53353741 ~ 53394476 (-) False G1562624
TU1787877 lncRNA upstream 67622 53356145 ~ 53358835 (-) True G1562624
TU1787965 lncRNA upstream 201677 53490200 ~ 53491431 (-) True G1562701
TU1787945 lncRNA upstream 221644 53510167 ~ 53511895 (-) True G1562682
XM_021572462.2 mRNA downstream 84492 53188075 ~ 53195009 (-) True mturn
XM_021572461.2 mRNA downstream 91764 53183343 ~ 53187737 (-) True LOC110496514
XM_036953219.1 mRNA downstream 264203 52918684 ~ 53015298 (-) False LOC110496850
XM_036953239.1 mRNA upstream 3890 53292413 ~ 53336840 (-) False LOC110496518
XM_036953240.1 mRNA upstream 3890 53292413 ~ 53350446 (-) False LOC110496518
XM_036953241.1 mRNA upstream 3890 53292413 ~ 53350447 (-) False LOC110496518
XR_005037511.1 mRNA upstream 4913 53293436 ~ 53336851 (-) True LOC110496518
XM_021572472.2 mRNA upstream 69206 53357729 ~ 53385162 (-) False snx13
TU1786175 other downstream 631724 52644989 ~ 52647777 (-) True G1561279
TU1786137 other downstream 922191 52356752 ~ 52357310 (-) False LOC110496491
TU1786055 other downstream 1029012 52249354 ~ 52250489 (-) True G1561167
TU1786046 other downstream 1096294 52179320 ~ 52183207 (-) True trak1b
TU1785112 other downstream 1824216 51382672 ~ 51455285 (-) False G1560339
TU1788031 other upstream 310127 53598650 ~ 53602694 (-) True G1562762
TU1787983 other upstream 333377 53621900 ~ 53628422 (-) False tomm7
TU1788090 other upstream 463883 53752406 ~ 53752683 (-) True G1562816
TU1788103 other upstream 585887 53874410 ~ 53875592 (-) True G1562828
TU1788095 other upstream 601186 53889709 ~ 53894949 (-) True mrpl3

Expression Profile