RNA id: TU1788031


Basic Information

Item Value
RNA id TU1788031
length 890
RNA type TUCP
GC content 0.51
exon number 3
gene id G1562762
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 53598650 ~ 53602694 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctctccactgctctttcttcctctccactgctctttcttcctctctactgctttctcttctcctctccactgctttctcttctcctctccactgctctaacctctcctctccactgctctttcttccactctactgctctcttctcctctccactgctctttcttcctctctactgctctttcttcctctctactgctttctcttctcctctccactgctttctcttctcctctccactgctttctcttctcctctccactgctctaacctctcctctccactgctctctcttctcctctccactgctctttcttccactcCACTGCTCTatcctctccactgctttctcttctcctctccactgctctatcctctccactgctttctcttctcctctatcgtctcctctccactgctctatcctctccactgctttctcttttcctctatcgtctcctctccactgctctatcctctccactgctttctcttctcctctccaatgctctctcttctcctctccactgctctctcttctcctctccgctgctctctcttctcctctccactgctctctcttctcctctccactgcttactcttctcctctccactgctctctcttctcctctccactgctctctcttctcctctccactgctctatcctctcctctccactgctctcttcttctccccactgttcttctcctctcccctgctctaacctatcctctccactgctttctcttctcctctccactgctttctcttctcctctctactgctctctcttctcctctccactgctctttcttcctctctactGCTTTCTATTCTCctctccactgctttctcttctcctctccactgctttctcttctcctctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1787945 lncRNA downstream 86755 53510167 ~ 53511895 (-) True G1562682
TU1787965 lncRNA downstream 107219 53490200 ~ 53491431 (-) True G1562701
TU1787875 lncRNA downstream 204174 53353741 ~ 53394476 (-) False G1562624
TU1787877 lncRNA downstream 239815 53356145 ~ 53358835 (-) True G1562624
TU1787867 lncRNA downstream 259020 53331774 ~ 53339630 (-) True G1562623
TU1787984 lncRNA upstream 21164 53623858 ~ 53628422 (-) True tomm7
TU1787996 lncRNA upstream 100398 53703092 ~ 53730527 (-) True G1562729
TU1787981 lncRNA upstream 101071 53703765 ~ 53705506 (-) False LOC110496534
TU1787982 lncRNA upstream 101071 53703765 ~ 53705600 (-) True LOC110496534
TU1787997 lncRNA upstream 131476 53734170 ~ 53743453 (-) True G1562730
XM_036953253.1 mRNA downstream 1504 53539731 ~ 53597146 (-) True LOC110496523
XM_021572478.2 mRNA downstream 1505 53539731 ~ 53597145 (-) False LOC110496523
XM_021572479.2 mRNA downstream 1979 53539731 ~ 53596671 (-) False LOC110496523
XM_021572477.2 mRNA downstream 60871 53531922 ~ 53537779 (-) True LOC110496522
XM_021572476.2 mRNA downstream 60875 53531922 ~ 53537775 (-) False LOC110496522
XM_021572480.2 mRNA upstream 21024 53623718 ~ 53628443 (-) False tomm7
XM_036953254.1 mRNA upstream 26172 53628866 ~ 53647992 (-) False fam126a
XM_021572481.2 mRNA upstream 26172 53628866 ~ 53649839 (-) False fam126a
XM_036953255.1 mRNA upstream 28333 53631027 ~ 53649839 (-) False fam126a
XM_036953256.1 mRNA upstream 28619 53631313 ~ 53649839 (-) True fam126a
TU1786175 other downstream 950873 52644989 ~ 52647777 (-) True G1561279
TU1786137 other downstream 1241340 52356752 ~ 52357310 (-) False LOC110496491
TU1786055 other downstream 1348161 52249354 ~ 52250489 (-) True G1561167
TU1786046 other downstream 1415443 52179320 ~ 52183207 (-) True trak1b
TU1785112 other downstream 2143365 51382672 ~ 51455285 (-) False G1560339
TU1787983 other upstream 19206 53621900 ~ 53628422 (-) False tomm7
TU1788090 other upstream 149712 53752406 ~ 53752683 (-) True G1562816
TU1788103 other upstream 271716 53874410 ~ 53875592 (-) True G1562828
TU1788095 other upstream 287015 53889709 ~ 53894949 (-) True mrpl3
TU1788544 other upstream 1036173 54638867 ~ 54652850 (-) True LOC110496860

Expression Profile