RNA id: TU1788085


Basic Information

Item Value
RNA id TU1788085
length 272
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G1562811
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 53747596 ~ 53747867 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttcttggatgggcacatCTAATGTAACTCtgtggcagcacccaaggggctagaattttcTAACTCTACCCTTAGACctggcggtgacgtagtgtccccatgagtgacagaacactgagccaatcacgacacaacgctccgtattttctgctgacttgccccaccaccacagaattcactgagctaggctgaaacacctgcattttggagctgccttgctcaagaaaacaaaaaaagagaccaggtttgtatgcagctttattacaTCAAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1787994 lncRNA downstream 561 53744392 ~ 53747035 (-) True LOC118941188
TU1787997 lncRNA downstream 4143 53734170 ~ 53743453 (-) True G1562730
TU1787988 lncRNA downstream 6606 53738343 ~ 53740990 (-) True LOC110496535
TU1787996 lncRNA downstream 17069 53703092 ~ 53730527 (-) True G1562729
TU1787982 lncRNA downstream 41996 53703765 ~ 53705600 (-) True LOC110496534
TU1788089 lncRNA upstream 3968 53751835 ~ 53752081 (-) True G1562815
TU1788091 lncRNA upstream 6662 53754529 ~ 53782777 (-) True G1562817
TU1788110 lncRNA upstream 25549 53773416 ~ 53793921 (-) True G1562835
TU1788106 lncRNA upstream 30286 53778153 ~ 53781014 (-) True G1562831
TU1788098 lncRNA upstream 69179 53817046 ~ 53822742 (-) True G1562823
XR_005037512.1 mRNA downstream 589 53744387 ~ 53747007 (-) False LOC118941188
XR_002469564.2 mRNA downstream 6544 53738342 ~ 53741052 (-) False LOC110496535
XR_002469563.2 mRNA downstream 41963 53703762 ~ 53705633 (-) False LOC110496534
XM_021572482.2 mRNA downstream 77094 53663547 ~ 53670502 (-) True aste1b
XM_021572483.2 mRNA downstream 77136 53663547 ~ 53670460 (-) False aste1b
XM_036953264.1 mRNA upstream 139270 53887137 ~ 53894981 (-) False mrpl3
XM_036953263.1 mRNA upstream 139270 53887137 ~ 53895002 (-) False mrpl3
XM_036953265.1 mRNA upstream 154381 53902248 ~ 53915395 (-) True cpne4b
XM_021572498.2 mRNA upstream 300997 54048864 ~ 54085680 (-) False atxn1a
XM_036953268.1 mRNA upstream 300997 54048864 ~ 54206719 (-) False atxn1a
TU1787983 other downstream 119174 53621900 ~ 53628422 (-) False tomm7
TU1788031 other downstream 144902 53598650 ~ 53602694 (-) True G1562762
TU1786175 other downstream 1099819 52644989 ~ 52647777 (-) True G1561279
TU1786137 other downstream 1390286 52356752 ~ 52357310 (-) False LOC110496491
TU1786055 other downstream 1497107 52249354 ~ 52250489 (-) True G1561167
TU1788090 other upstream 4539 53752406 ~ 53752683 (-) True G1562816
TU1788103 other upstream 126543 53874410 ~ 53875592 (-) True G1562828
TU1788095 other upstream 141842 53889709 ~ 53894949 (-) True mrpl3
TU1788544 other upstream 891000 54638867 ~ 54652850 (-) True LOC110496860
TU1788592 other upstream 912759 54660626 ~ 54665643 (-) True G1563253

Expression Profile