RNA id: TU1788110


Basic Information

Item Value
RNA id TU1788110
length 620
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id G1562835
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 53773416 ~ 53793921 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgttgaattagtctgttcccccctctgttggtttagtctttccccccctctgttgatttagtccgttcctccctctgttggtttagtctgttcctccctctgttgatTTAGTCCGTGCCTCCCTCgtttggtttagtctgttcctccatctgtttgtttagtctgttcctccatctgttggtttagtctgttcctccctctgttggtttagtctgtttctccctctgttggtttagtctgttcctccatctgttggtttagtctgttcctccatctattGGTTTAGTCTGTGCCTCCATctattggtttagtctgttcctccatctgttggtttagtctgttcctccatctgttggtttagtctgttcctccctctgttggtttagtctgttcctccctctgttggtttagtctgttcctccctctgttggtttagtctgttcctccctctgttggtttagtctgttcctccctctgctggtttagtctgttcctccctctgttggtttagtctgttcctccctctgttggtttagtctgttaccCCCTCTgcaggtttagtctgttcctccatctgttggtttagtctgttcctccctctgttggtttagtctgttcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1788089 lncRNA downstream 21335 53751835 ~ 53752081 (-) True G1562815
TU1788085 lncRNA downstream 25549 53747596 ~ 53747867 (-) True G1562811
TU1787994 lncRNA downstream 26381 53744392 ~ 53747035 (-) True LOC118941188
TU1787997 lncRNA downstream 29963 53734170 ~ 53743453 (-) True G1562730
TU1788098 lncRNA upstream 23125 53817046 ~ 53822742 (-) True G1562823
TU1788101 lncRNA upstream 29008 53822929 ~ 53866397 (-) True G1562826
TU1788102 lncRNA upstream 38031 53831952 ~ 53842917 (-) True G1562827
TU1788112 lncRNA upstream 41546 53835467 ~ 53844084 (-) True G1562837
TU1788104 lncRNA upstream 48685 53842606 ~ 53870650 (-) True G1562829
XR_005037512.1 mRNA downstream 26409 53744387 ~ 53747007 (-) False LOC118941188
XR_002469564.2 mRNA downstream 32364 53738342 ~ 53741052 (-) False LOC110496535
XR_002469563.2 mRNA downstream 67783 53703762 ~ 53705633 (-) False LOC110496534
XM_021572482.2 mRNA downstream 102914 53663547 ~ 53670502 (-) True aste1b
XM_021572483.2 mRNA downstream 102956 53663547 ~ 53670460 (-) False aste1b
XM_036953264.1 mRNA upstream 93216 53887137 ~ 53894981 (-) False mrpl3
XM_036953263.1 mRNA upstream 93216 53887137 ~ 53895002 (-) False mrpl3
XM_036953265.1 mRNA upstream 108327 53902248 ~ 53915395 (-) True cpne4b
XM_021572498.2 mRNA upstream 254943 54048864 ~ 54085680 (-) False atxn1a
XM_036953268.1 mRNA upstream 254943 54048864 ~ 54206719 (-) False atxn1a
TU1788090 other downstream 20733 53752406 ~ 53752683 (-) True G1562816
TU1787983 other downstream 144994 53621900 ~ 53628422 (-) False tomm7
TU1788031 other downstream 170722 53598650 ~ 53602694 (-) True G1562762
TU1786175 other downstream 1125639 52644989 ~ 52647777 (-) True G1561279
TU1786137 other downstream 1416106 52356752 ~ 52357310 (-) False LOC110496491
TU1788103 other upstream 80489 53874410 ~ 53875592 (-) True G1562828
TU1788095 other upstream 95788 53889709 ~ 53894949 (-) True mrpl3
TU1788544 other upstream 844946 54638867 ~ 54652850 (-) True LOC110496860
TU1788592 other upstream 866705 54660626 ~ 54665643 (-) True G1563253
TU1790620 other upstream 2687547 56481468 ~ 56488289 (-) True G1565122

Expression Profile